Table 4.
Analysis of repetitive sequences from pilot BAC end sequences of Oryza BAC libraries
|
Oryza species |
Genome |
# reads |
GC % |
Total detected |
ISRb |
% of interspersed |
Low complexity |
Simple |
||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Type |
Size (Mb) |
Length (kb)a |
kb |
%
|
kb |
LTR |
LINE |
SINE |
DNA |
UNC |
kb |
%
|
kb |
%
|
||||||||||||
| glaberrima | AA | 357 | 2304 | 41.7 | 1362 | 396 | 29 | 215 | 77.0 | 3.9 | 0.7 | 17.8 | 0.6 | 5.1 | 0.4 | 4.8 | 0.4 | |||||||||
| rufipogon | AA | 439 | 2249 | 42.1 | 1571 | 574 | 37 | 285 | 78.6 | 2.2 | 0.9 | 17.6 | 0.7 | 5.7 | 0.4 | 5.4 | 0.3 | |||||||||
| nivara | AA | 448 | 2213 | 42.8 | 1458 | 519 | 36 | 236 | 78.9 | 3.1 | 1.1 | 16.5 | 0.4 | 5.1 | 0.4 | 5.5 | 0.4 | |||||||||
| punctata | BB | 425 | 1503 | 41.8 | 1062 | 385 | 36 | 243 | 83.2 | 1.1 | 0.2 | 15.5 | 0.0 | 3.7 | 0.4 | 2.7 | 0.3 | |||||||||
| officinalis | CC | 651 | 2910 | 42.9 | 2070 | 859 | 41 | 425 | 77.3 | 1.1 | 0.3 | 21.1 | 0.2 | 7.3 | 0.4 | 5.8 | 0.3 | |||||||||
| minuta | BBCC | 1124 | 3212 | 42.5 | 2243 | 859 | 38 | 469 | 74.6 | 0.9 | 0.3 | 24.1 | 0.1 | 7.9 | 0.4 | 3.7 | 0.2 | |||||||||
| alta | CCDD | 1008 | 2196 | 43.0 | 1274 | 485 | 38 | 201 | 79.3 | 2.4 | 0.1 | 18.0 | 0.1 | 3.8 | 0.3 | 3.9 | 0.3 | |||||||||
| australiensis | EE | 965 | 2254 | 44.4 | 1572 | 768 | 49 | 354 | 80.9 | 0.8 | 0.0 | 18.2 | 0.0 | 5.4 | 0.4 | 4.0 | 0.3 | |||||||||
| brachyantha | FF | 362 | 623 | 40.9 | 357 | 60 | 17 | 20 | 85.4 | 3.3 | 0.0 | 11.2 | 0.0 | 2.3 | 0.6 | 2.4 | 0.7 | |||||||||
| granulata | GG | 882 | 2105 | 45.6 | 1452 | 507 | 35 | 203 | 87.6 | 1.7 | 0.1 | 10.5 | 0.0 | 4.5 | 0.3 | 2.6 | 0.2 | |||||||||
| ridleyi | HHJJ | 1283 | 3658 | 43.4 | 2579 | 862 | 33 | 503 | 69.9 | 0.2 | 0.1 | 29.7 | 0.1 | 8.9 | 0.4 | 5.7 | 0.2 | |||||||||
| coarctata
|
HHKK
|
NDc
|
3764
|
40.3
|
2577
|
412
|
16
|
233
|
82.6
|
2.2
|
0.2
|
14.7
|
0.2
|
18.3
|
0.7
|
4.6
|
0.2
|
|||||||||
