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Table of Contents
January 2006; 16 (1)
ARTICLES
Select this article
Comprehensive analysis of transcriptional promoter structure and function in 1% of the human genome
Sara J. Cooper
,
Nathan D. Trinklein
,
Elizabeth D. Anton
,
Loan Nguyen
,
and
Richard M. Myers
Genome Res.
January 2006
16
:
1
-
10
;
Published in Advance
December 12, 2005
,
doi:
10.1101/gr.4222606
Abstract
Full Text
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Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome
Timothy Ravasi
,
Harukazu Suzuki
,
Ken C. Pang
,
Shintaro Katayama
,
Masaaki Furuno
,
Rie Okunishi
,
Shiro Fukuda
,
Kelin Ru
,
Martin C. Frith
,
M. Milena Gongora
,
Sean M. Grimmond
,
David A. Hume
,
Yoshihide Hayashizaki
,
and
John S. Mattick
Genome Res.
January 2006
16
:
11
-
19
;
Published in Advance
December 12, 2005
,
doi:
10.1101/gr.4200206
Abstract
Full Text
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Organization of the
Caenorhabditis elegans
small non-coding transcriptome: Genomic features, biogenesis, and expression
Wei Deng
,
Xiaopeng Zhu
,
Geir Skogerbø
,
Yi Zhao
,
Zhuo Fu
,
Yudong Wang
,
Housheng He
,
Lun Cai
,
Hong Sun
,
Changning Liu
,
Biao Li
,
Baoyan Bai
,
Jie Wang
,
Dong Jia
,
Shiwei Sun
,
Hang He
,
Yan Cui
,
Yu Wang
,
Dongbo Bu
,
and
Runsheng Chen
Genome Res.
January 2006
16
:
20
-
29
;
Published in Advance
December 12, 2005
,
doi:
10.1101/gr.4139206
Abstract
Full Text
Full Text (PDF)
Supplemental Research Data
LETTERS
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Transcription-mediated gene fusion in the human genome
Pinchas Akiva
,
Amir Toporik
,
Sarit Edelheit
,
Yifat Peretz
,
Alex Diber
,
Ronen Shemesh
,
Amit Novik
,
and
Rotem Sorek
Genome Res.
January 2006
16
:
30
-
36
;
Published in Advance
December 12, 2005
,
doi:
10.1101/gr.4137606
Abstract
Full Text
Full Text (PDF)
Supplemental Research Data
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Tandem chimerism as a means to increase protein complexity in the human genome
Genís Parra
,
Alexandre Reymond
,
Noura Dabbouseh
,
Emmanouil T. Dermitzakis
,
Robert Castelo
,
Timothy M. Thomson
,
Stylianos E. Antonarakis
,
and
Roderic Guigó
Genome Res.
January 2006
16
:
37
-
44
;
Published in Advance
December 12, 2005
,
doi:
10.1101/gr.4145906
Abstract
Full Text
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Abundant novel transcriptional units and unconventional gene pairs on human chromosome 22
Leonard Lipovich
and
Mary-Claire King
Genome Res.
January 2006
16
:
45
-
54
;
Published in Advance
December 12, 2005
,
doi:
10.1101/gr.3883606
Abstract
Full Text
Full Text (PDF)
Supplemental Research Data
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Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes
Kouichi Kimura
,
Ai Wakamatsu
,
Yutaka Suzuki
,
Toshio Ota
,
Tetsuo Nishikawa
,
Riu Yamashita
,
Jun-ichi Yamamoto
,
Mitsuo Sekine
,
Katsuki Tsuritani
,
Hiroyuki Wakaguri
,
Shizuko Ishii
,
Tomoyasu Sugiyama
,
Kaoru Saito
,
Yuko Isono
,
Ryotaro Irie
,
Norihiro Kushida
,
Takahiro Yoneyama
,
Rie Otsuka
,
Katsuhiro Kanda
,
Takahide Yokoi
,
Hiroshi Kondo
,
Masako Wagatsuma
,
Katsuji Murakawa
,
Shinichi Ishida
,
Tadashi Ishibashi
,
Asako Takahashi-Fujii
,
Tomoo Tanase
,
Keiichi Nagai
,
Hisashi Kikuchi
,
Kenta Nakai
,
Takao Isogai
,
and
Sumio Sugano
Genome Res.
January 2006
16
:
55
-
65
;
Published in Advance
December 12, 2005
,
doi:
10.1101/gr.4039406
Abstract
Full Text
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Systematic genome-wide annotation of spliceosomal proteins reveals differential gene family expansion
Nuno L. Barbosa-Morais
,
Maria Carmo-Fonseca
,
and
Samuel Aparício
Genome Res.
January 2006
16
:
66
-
77
;
Published in Advance
December 12, 2005
,
doi:
10.1101/gr.3936206
Abstract
Full Text
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Molecular evolution and tempo of amplification of human LINE-1 retrotransposons since the origin of primates
Hameed Khan
,
Arian Smit
,
and
Stéphane Boissinot
Genome Res.
January 2006
16
:
78
-
87
;
Published in Advance
December 12, 2005
,
doi:
10.1101/gr.4001406
Abstract
Full Text
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The evolutionary dynamics of α-satellite
M. Katharine Rudd
,
Gregory A. Wray
,
and
Huntington F. Willard
Genome Res.
January 2006
16
:
88
-
96
;
Published in Advance
December 12, 2005
,
doi:
10.1101/gr.3810906
Abstract
Full Text
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A missense mutation in the bovine
SLC35A3
gene, encoding a UDP-
N
-acetylglucosamine transporter, causes complex vertebral malformation
Bo Thomsen
,
Per Horn
,
Frank Panitz
,
Emøke Bendixen
,
Anette H. Petersen
,
Lars-Erik Holm
,
Vivi H. Nielsen
,
Jørgen S. Agerholm
,
Jens Arnbjerg
,
and
Christian Bendixen
Genome Res.
January 2006
16
:
97
-
105
;
Published in Advance
December 12, 2005
,
doi:
10.1101/gr.3690506
Abstract
Full Text
Full Text (PDF)
OPEN ACCESS ARTICLE
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Variation in crossing-over rates across chromosome 4 of
Arabidopsis thaliana
reveals the presence of meiotic recombination “hot spots”
Jan Drouaud
,
Christine Camilleri
,
Pierre-Yves Bourguignon
,
Aurélie Canaguier
,
Aurélie Bérard
,
Daniel Vezon
,
Sandra Giancola
,
Dominique Brunel
,
Vincent Colot
,
Bernard Prum
,
Hadi Quesneville
,
and
Christine Mézard
Genome Res.
January 2006
16
:
106
-
114
;
Published in Advance
December 12, 2005
,
doi:
10.1101/gr.4319006
Abstract
Full Text
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Uneven distribution of expressed sequence tag loci on maize pachytene chromosomes
Lorinda K. Anderson
,
Ann Lai
,
Stephen M. Stack
,
Carene Rizzon
,
and
Brandon S. Gaut
Genome Res.
January 2006
16
:
115
-
122
;
Published in Advance
December 7, 2005
,
doi:
10.1101/gr.4249906
Abstract
Full Text
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Methods
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Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS)
Gregory E. Crawford
,
Ingeborg E. Holt
,
James Whittle
,
Bryn D. Webb
,
Denise Tai
,
Sean Davis
,
Elliott H. Margulies
,
YiDong Chen
,
John A. Bernat
,
David Ginsburg
,
Daixing Zhou
,
Shujun Luo
,
Thomas J. Vasicek
,
Mark J. Daly
,
Tyra G. Wolfsberg
,
and
Francis S. Collins
Genome Res.
January 2006
16
:
123
-
131
;
Published in Advance
December 12, 2005
,
doi:
10.1101/gr.4074106
Abstract
Full Text
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Development of a microscopic platform for real-time monitoring of biomolecular interactions
Yasuhiro Sasuga
,
Tomomi Tani
,
Masahito Hayashi
,
Hisashi Yamakawa
,
Osamu Ohara
,
and
Yoshie Harada
Genome Res.
January 2006
16
:
132
-
139
;
Published in Advance
December 12, 2005
,
doi:
10.1101/gr.4235806
Abstract
Full Text
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Supplemental Research Data
RESOURCE
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The
Oryza
bacterial artificial chromosome library resource: Construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus
Oryza
Jetty S.S. Ammiraju
,
Meizhong Luo
,
José L. Goicoechea
,
Wenming Wang
,
Dave Kudrna
,
Christopher Mueller
,
Jayson Talag
,
HyeRan Kim
,
Nicholas B. Sisneros
,
Barbara Blackmon
,
Eric Fang
,
Jeffery B. Tomkins
,
Darshan Brar
,
David MacKill
,
Susan McCouch
,
Nori Kurata
,
Georgina Lambert
,
David W. Galbraith
,
K. Arumuganathan
,
Kiran Rao
,
Jason G. Walling
,
Navdeep Gill
,
Yeisoo Yu
,
Phillip SanMiguel
,
Carol Soderlund
,
Scott Jackson
,
and
Rod A. Wing
Genome Res.
January 2006
16
:
140
-
147
;
Published in Advance
December 12, 2005
,
doi:
10.1101/gr.3766306
Abstract
Full Text
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Supplemental Research Data
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January 2006;
16
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