Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species

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Figure 3.
Figure 3.

Syntenic relationship between japonica chromosome 3 and maize chromosomes 1, 5, and 9. We used maize markers, such as anchored markers and EST-derived overgoes and BAC end sequences to construct this syntenic map with the rice chromosome 3 pseudomolecule. Graphics were generated using SyMAP (www.agcol.arizona.edu/symap). (A) Overall picture of the rice chromosome 3-maize synteny. Rice chr3: the filled black bar; maize chr1 (red), chr5 (orange), and chr9 (blue). (B) Synteny of rice chromosome 3 pseudomolecule to the maize FPC map. (C,D) Synteny of the short arm of rice chromosome 3 with maize chromosomes 1 and 9 in detail. (E,F) Synteny of the long arm of rice chromosome 3 with maize chromosomes 1 and 5 in detail. (Green line) Marker and overgoes-originated EST sequences; (purple line) maize BAC end sequences.

This Article

  1. Published in Advance August 18, 2005, doi: 10.1101/gr.3869505 Genome Res. 15: 1284-1291

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