Table 1.
Features of cotton consensus chromosomes
|
Cotton Chra |
Homoeolog (At,Dt,D) |
# Ioci |
Length (cM) |
Largest gap (cM) |
% Ioci sequenced |
% Ioci with match in Arab. |
% Ioci in conserved synteny with Arab.b |
% Ioci with no match in Arab. |
|---|---|---|---|---|---|---|---|---|
| C01 | 7,16,1 | 245 | 195.4 | 9.9 | 91.4 | 65.2 | 38.4 | 34.8 |
| C02 | 1,15,2 | 194 | 176.4 | 6.9 | 94.8 | 52.7 | 54.6 | 47.3 |
| C03 | 2/3,17,3 | 149 | 120.7 | 14.5 | 94.0 | 66.4 | 62.4 | 33.6 |
| C04 | A02,D03,4 | 208 | 183.8 | 6.2 | 94.2 | 63.3 | 35.5 | 36.7 |
| C05 | 2/3,14,5 | 246 | 191.9 | 11.4 | 90.2 | 61.7 | 46.7 | 38.3 |
| C06 | 9,23,6 | 235 | 172.6 | 6.4 | 91.9 | 61.1 | 33.3 | 38.9 |
| C07 | A03,D02,7 | 290 | 217.2 | 7.9 | 94.1 | 61.5 | 49.4 | 38.5 |
| C08 | 12,26,8 | 248 | 159.5 | 6.4 | 91.5 | 63.3 | 52.4 | 36.7 |
| C09 | 4/5,D08,9 | 382 | 264.6 | 7.3 | 89.5 | 58.8 | 43.8 | 41.2 |
| C10 | 6,25,10 | 164 | 172.6 | 9.1 | 95.1 | 58.3 | 48.4 | 41.7 |
| C11 | 10,20,11 | 227 | 170.2 | 6.1 | 94.7 | 63.7 | 54.0 | 36.3 |
| C12 | 4/5,22,12 | 186 | 101.7 | 4.3 | 94.7 | 70.1 | 41.9 | 29.9 |
| C13 | A01,18,13 | 242 | 198.1 | 11.8 | 94.6 | 63.3 | 46.2 | 36.7 |
| Total
|
|
3016
|
2324.7
|
14.5
|
92.8
|
62.1
|
46.1
|
37.9
|
-
↵a Based on hypothetical ancestral chromosomes; does not correspond to published nomenclature for modern tetraploid chromosomes (Rong et al. 2004).
-
↵b Including Ioci identified by either CS2, FISH, or both.
