Table 1.
Summary of settings and results from various experimental designs
|
Orthology data |
Tree reconstruction method |
Organisms |
HGT events |
Gene loss |
Vertical transfers |
|---|---|---|---|---|---|
| OFAM | Average ortholog similarity | 165 | 39,005 | 88,834 | 640,328 |
| OFAM | Gene content | 165 | 36,385 | 89,951 | 646,791 |
| OFAM | Genome conservation | 165 | 39,589 | 84,630 | 635,056 |
| STRING
|
Gene content
|
98
|
9968
|
32,943
|
288,225
|
