Genome-wide prediction of imprinted murine genes

Table 1.

Homologs of imprinted gene candidates showing linkage to human conditions


Condition

Chromosome

Locus

Coordinate

Expressiona,b

Linkage

Reference
Alzheimer 10p11 D10S1208 35.3 m linkage to late-onset Alzheimer disease (AD)b Bassett et al. (2002)
Epc1 32.6 M
C1 orf9 35.7 M
Atopy 13q14 D13S161 46.7 p linkage to atopyb Bhattacharyya et al. (2000)
LCP1 45.6 P
Autism 9p22 D9S157 17.6 p linkage to autismb Lamb et al. (2005)
C9orf39 17.1 P
Bipolar 13q13 D13S1493 32.9 m linkage to bipolar disorderb McInnis et al. (2003)
Q5TBK1 31.9 M
18q22 D18S878 61.6 p linkage to bipolar disorderb McInnis et al. (2003)
SERPINB2 59.7 M
Diabetes 11q13-14 D11S2371-D11S2002 73.2-79.6 p linkage to birth weight (indirectly to diabetes)b Lindsay et al. (2002)
NEU3 74.4 M mice overexpressing Neu3 develop diabetic phenotype Sasaki et al. (2003)
OR2AT4 74.5 M
CAPN5 76.5 M
Homosexuality 10q26 D10S217 129.4 m linkage to male sexual orientationb Mustanski et al. (2005)
C10orf90 128.1 P
STK32C 133.9 M
NKX6-2 134.4 M
Obesity 10p12 D10S197 26.5 m linkage to obesityb Dong et al. (2005)
GAD2 26.5 M candidate gene for obesity Boutin et al. (2003)
Paternal UPD 14q12 D14S608 27.9 paternal UPD results in fetal malformationsb Kurosawa et al. (2002)
NOVA1 26.0 M
FOXG13 28.3 P
Schizophrenia 2p12 D2S139 76.7 p linkage to relative hand skillb, Tourette syndrome and schizophrenia Francks et al. (2003); Simonic et al. (2001); DeLisi et al. (2002)
LOXL3 74.7 M
DOK1 74.7 P
HK2 75.0 M
TACR1 75.2 P
22q12 D22S283 35.1 m linkage to schizophreniab DeLisi et al. (2002)
Q96PY3 36.1 P
C22orf23 36.7 M
Thrombosis 5q13 D5S2003 74.6 m linkage to high FVIII levelsb Berger et al. (2005)
Q9P109 74.4 M
9q22 D9S910 98.6 p linkage to high FVIII levelsb Berger et al. (2005)
SAMD6 98.6 P
ALG2 99.1 M
NR4A3 99.7 P
TXNDC4 99.8 P
11q21 D11S4176 93.7 m linkage to high FVIII levelsb Berger et al. (2005)


JMJD2D
94.4
M


  • Assignment of cytogenetic band and coordinates (in megabases) is based on Ensembl version 29.35b.

  • a Genes predicted to be expressed from the maternal allele are denoted by M, paternally expressed genes by P.

  • b Parent-of-origin effect was observed (m and p denote maternal and paternal effects, respectively).

This Article

  1. Genome Res. 15: 875-884

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