Table 4.
The list of miRNA genes present within the set of ultraconserved sequences between D. melanogaster and D. pseudoobscura longer than 50 bp
|
MicroRNA |
Genomic location |
Length of the uc-element |
Reference |
|---|---|---|---|
| dme-mir-125 | Downstream of CG10283 | 113 | 1 |
| dme-mir-307 | Intron of Mmp2 (CG1794) | 92 | 1 |
| dme-mir-9a | Intergenic | 89 | 1 |
| dme-mir-100 | Downstream of CG10283 | 86 | 1 |
| dme-mir-2b-2 | Intron of Spi (CG10334) | 86 | 1 |
| dme-mir-2a-2 | Intron of Spi (CG10334) | 83 | 1 |
| dme-mir-279 | Upstream of CG31044 | 75 | 1 |
| dme-mir-280 | Intergenic | 69 | 2 |
| dme-mir-iab-4* | Within iab-4 RNA | 63 | 1 |
| dme-bantam | Intergenic | 59 | 1 |
| dme-mir-219 | Intergenic | 59 | 2 |
| dme-mir-9c* | grp intron (CG17161) | 58 | 1 |
| dme-mir-287 | Intergenic | 55 | 2 |
| dme-let-7 | Intergenic | 54 | 1 |
| dme-mir-277 | Downstream of Fmr1 (CG6203) | 54 | 1 |
| dme-mir-289 | Intron of bru-3 (CG12478) | 53 | 2 |
| dme-mir-288
|
Intergenic
|
50
|
2
|
-
microRNAs marked with an asterisk were also found in the Anopheles genome. References are (1) Aravin et al. 2003, (2) Lai et al. 2003. The full list of uc-elements can be found at http://www.imb.uq.edu.au/groups/mattick/drosophila_uc/.
