Table 3.
Tests of the standard neutral model by population for the 10 loci surveyed in this study
|
Population |
HKA χ2 |
Mean Tajima's D |
Mean Fay & Wu's H |
|---|---|---|---|
| Zimbabwe | 1.96 (0.732)a | −0.38 (0.012)c | 0.78 (0.881) |
| Kenya | 5.43 (0.124) | −0.48 (0.003) | 0.15 (0.679) |
| Gabon | 8.86 (0.010) | −0.75 (<10−4)b | −0.96 (0.205) |
| Netherlandsd | 14.30 (0.009)b | −0.80 (<10−3)b | −3.38 (<10−4)b,c |
| Pennsylvania
|
11.03 (0.032)b
|
−0.65 (<10−3)b,c
|
−3.53 (<10−4)b,c
|
-
↵a P-values of the observed summary under the standard neutral model with recombination are given in parentheses. ρ/θ in simulations were sampled according to their posterior probability estimated for the Zimbabwe population (see Fig. 1C).
-
↵b Significant with no recombination.
-
↵c Significantly more variance in the summary than expected (P < 0.05).
-
↵d The probability of observing the one invariant locus (out of 10) in the Netherlands population is P = 0.038.
