Table 2.
Comparison of the genomes of Xanthomonas campestris pv. campestris 8004 and Xcc ATCC 33913
|
|
Xcc 8004 |
Xcc ATCC 33913a |
|---|---|---|
| General features of the chromosome | ||
| Genome size (bp) | 5,148,708 | 5,076,187 |
| GC content | 64.94% | 65.00% |
| Total number of predicted CDSs | 4273 (87)b | 4181 |
| CDSs with functional assignment | 2671 (1) | 2708 |
| Conserved hypothetical CDSs | 1523 (27) | 1276 |
| Hypothetical CDSs | 79 (59) | 198 |
| CDSs categorized by sequence variations | ||
| Homologs with identical nucleic acid sequence | 3467c | 3408 |
| Homologs with SNPs and the same length | 498d | 500c |
| Homologs with insertions/deletions | 200 | 211c |
| Strain-specific genes | 108 | 62 |
| Average CDS length (bp) | 1023 | 1030 |
| Insertion sequence elements (IS) | 115 | 109 |
| Transfer RNA | 53 | 53 |
| tmRNA | 1 | 1 |
| Ribosomal RNA operons
|
2
|
2
|
-
↵a Genomic data of Xcc ATCC 33913 are according to da Silva et al. (2002) and GenBank (accession no. AE008922).
-
↵b The figures in parentheses indicate the number of CDSs that have the homologs in Xcc ATCC 33913, but were not annotated by da Silva et al. (2002).
-
↵c Signifies the existence of duplication CDSs.
-
↵d These CDSs were used in analyzing the variation of single-nucleotide polymorphisms (SNPs) between two Xcc genomes (Details in Table 3).
