Circular representation of the Xcc 8004 genome and EZ::TN transposon insertion sites of virulence-reduced mutants. Circles range from 1 (outer circle) to 7 (inner circle). (Circle 1) EZ::TN insertional locations, gene names, or codes are according to Supplemental Table 3; (IG) intergenic region; ori, the origin of DNA replication; Red arrowheads indicate Xcc 8004 strain-specific chromosomal segments. (Circle 2) CDSs on forward strand. (Circle 3) CDSs on reverse strand. (Circle 4) tRNA genes. (Circle 5) rRNA genes. (Circle 6) GC skew [(G-C)/(G+C)], red indicates values >0 and green <0. (Circle 7) G+C contents. Colors in circle 2 and 3 represent functional categories; orange for intermediary metabolism; green for biosynthesis of small molecules; blue for macromolecule metabolism; magenta for cell structure; khaki for cellular processes; green for biosynthesis of small molecules; light-blue for mobile genetic elements; pink for pathogenicity, virulence, and adaptation; yellow for hypothetical and conserved hypothetical proteins; dark-green for ORFs with an undefined category.
