The Chlamydophila abortus genome sequence reveals an array of variable proteins that contribute to interspecies variation

Table 2.

Location of Pmp conserved repeats, middle (PMP_M), and autotransporter domains

Name
No. of repeatsa
Amino acid range of repeatsd
PMP_M domaind
Autotransporter domaind
CAB200 27 140-1200 1266-1451 1497-1780
CAB201 9 120-390 466-615 660-924
CAB265 9 50-350 453-673 711-980
CAB266 9 110-380 456-639 677-940
CAB267 0 — — 164-359
CAB268 6 180-360 478-646 690-972
CAB269 9 130-420 506-706 745-1016
CAB270b 3 150-240 353-522 563-856
CAB273b 4 120-300 428-591 632-927
CAB277 4 90-230 341-499 541-832
CAB278 4 100-300 351-508 549-841
CAB279c 4 150-270 348-500 539-826
CAB281 3 150-240 353-509 548-839
CAB282 6 150-330 440-591 631-918
CAB283 6 290-620 839-1046 1085-1370
CAB596c 4 150-310 354-508 547-838
CAB598 3 150-270 348-500 539-826
CAB776
19
180-900
1017-1207
1251-1520

  • ↵a The number of repeats was estimated using both visual and computational evidence.

  • ↵b Pseudogenes for which the sequence has been reconstructed in silico.

  • ↵c Phase-variable CDS for which the sequence has been reconstructed in silico.

  • ↵d Represents amino acid positions.

This Article

  1. Published in Advance April 18, 2005, doi: 10.1101/gr.3684805 Genome Res. 15: 629-640

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