Table 4.
Summary of ECgene for the rat genome
|
|
Part A |
Part A + B |
Part A + B + C |
|---|---|---|---|
| No. of genes | 30,267 | 38,566 | 94,673 |
| No. of spliced genes (multi-exon genes) | 23,707 | 26,215 | 27,406 |
| No. of unspliced genes (single-exon genes) | 6560 | 12,351 | 67,267 |
| No. of transcripts | 46,707 | 57,352 | 114,378 |
| No. of spliced transcripts | 39,441 | 44,082 | 46,083 |
| No. of protein-coding transcripts | 42,505 | 52,247 | 92,238 |
| No. of protein-coding transcripts with a polyA tail | 13,371 | 16,301 | 17,433 |
| No. of noncoding transcripts | 4202 | 5105 | 22,140 |
| No. of noncoding transcripts with a polyA tail | 879 | 1039 | 1040 |
| No. of alternatively spliced genes | 5294 | 7572 | 8699 |
| Percentage of alternatively spliced genes among multi-exon genes | 22% | 29% | 32% |
| No. of alternative spliced genes with at least one EST-only splice variants | 4476 | 6604 | 7722 |
| Average number of isoforms for spliced genesa
|
1.7
|
1.7
|
1.7
|
-
↵a Average number of isoforms per gene for spliced genes = No. of spliced transcripts/No. of spliced genes
