Table 3.
RCP's representatives from the prokaryota clusters with more than four members and the seven randomly chosen clusters with less than five members
|
gi accession |
Species |
Repeat type (length) |
|
Number of members in the cluster |
Protein/function |
|---|---|---|---|---|---|
| 26987138 | Pseudomonas putida | G(7) | 5 | Hypothetical protein | Unknown | |
| 2983200 | Aquifex aeolicus | A(7) & R(9) | * | 25 | Ribonuclease E |
| 33602211 | Bordetella bronchiseptica | P(11) | 8 | Proline-rich inner membrane protein | Unknown | |
| 33331898 | Mycoplasma hyopneumoniae | Q(13) | 5 | P216 surface protein | Unknown | |
| 32473910 | Rhodopirellula baltica | G(7) | * | 6 | Polyribonucleotide nucleotidyltransferase | RNA/DNA binding |
| 32474384 | R. baltica | R(7) | 10 | Probable serine/threonine-protein kinase | Enzyme | |
| 27375632 | Bradyrhizobium japonicum | P(7) & P(8) & P(7) | 11 | Hypothetical protein blr0521 | Unknown | |
| 33864553 | Synechococcus sp. WH 8102 | G(7) | 9 | RNA-binding region RNP-1 | RNA binding | |
| 27378819 | B. japonicum | S(7) | 7 | Efflux protein | Transport | |
| 29830831 | Streptomyces avermitilis | G(7) | 6 | Putative single-stranded DNA-binding protein | DNA binding | |
| 34499217 | Chromobacterium violaceum | E(7) | 8 | RNA polymerase σ factor RpoD | Transcription | |
| 32041487 | Pseudomonas aeruginosa | S(17) | 23 | β-propeller domains of methanol dehydrogenase type | Enzyme | |
| 27367908 | Vibrio vulnificus | Q(89) | 5 | TPR repeat containing protein | Unknown | |
| 23015533 | Magnetospirillum magnetotacticum | G(7) | *+ | 9 | DnaJ-class molecular chaperone with C-terminal Zn finger domain |
| 23129192 | Nostoc punctiforme | G(8) | 13 | Periplasmic protein TonB, links inner and outer membranes | Structural | |
| 20094262 | Methanopyrus kandleri | E(7) & E(10) | *+ | 9 | Ribosomal protein L10 | Translation |
| 16124685 | Caulobacter crescentus | A(7) | 6 | Methyl-accepting chemotaxis protein McpA | Signaling | |
| 23027882 | Microbulbifer degradans | G(7) | 5 | Cation/multidrug efflux pump | Transport | |
| 23472931 | Pseudomonas syringae | A(7) & A(7) | * | 5 | Tfp pilus assembly protein FimV | Structural |
| 21226168 | Methanosarcina mazei | G(7) | 13 | Hypothetical protein MM0066 | Unknown | |
| 4887174 | Neisseria meningitidis | T(7) | 5 | Porin | |
| 22991761 | Enterococcus faecium | S(9) | * | 19 | Muramidase (flagellum-specific) | Enzyme |
| 15839665 | Mycobacterium tuberculosis | A(8) | 10 | PPE family protein | Unknown | |
| 399792 | Erwinia chrysanthemi | S(7) | 9 | PECTIC ENZYMES SECRETION PROTEIN OUTD | Transport | |
| 22968935 | Rhodospirillum rubrum | P(7) | * | 10 | Mg-chelatase subunit ChII | Enzyme |
| 22125459 | Yersinia pestis | G(7) & S(8) | 13 | Hypothetical | Unknown | |
| 580740 | Azotobacter vinelandii | A(8) | 6 | Dihydrolipoyltransacetylase | Enzyme | |
| 8163676 | Streptococcus pneumoniae | S(7) | 7 | Hypothetical protein Rv3088 U | |
| 7481905 | Streptomyces sp. | A(7) | 7 | Polyketide synthase | Enzyme | |
| 14602144 | Aeropyrum pernix | G(7) | 10 | Hypothetical protein APE2556 | |
| 23050783 | Methanosarcina barkeri | E(14) | 10 | CO dehydrogenase/acetyl-CoA synthase β subunit | Enzyme | |
| 23051653 | M. barkeri | E(7) | *+ | 5 | Ribosomal protein L12E | Translation |
| 22968174 | R. rubrum | G(9) | * | 8 | Membrane protease subunits, stomatin/prohibitin homologs | Enzyme |
| 15604160 | Rickettsia prowazekii str. Madrid E | P(8) | 7 | VIRB10 protein (virB10) U | |
| 17549401 | Ralstonia solanacearum | G(7) | * | 117 | Xylanase | Enzyme |
| 23465971 | Bifidobacterium longum | A(7) | 7 | Cell division protein FtsK-DNA translocase | DNA binding | |
| 15806123 | Deinococcus radiodurans | P(8) | 7 | ABC transporter, ATP-binding protein, EF-3 family | Transport | |
| 20149845 | Archaeoglobus fulgidus | A(32) | 7 | Chain B, Reverse Gyrase | DNA binding | |
| 29840119 | Chlamydophila caviae | S(7) | * | 16 | ATP-dependent Clp protease, ATP-binding subunit ClpC | Enzyme |
| 11095653 | Treponema pallidum | A(8) | 15 | TprK U | Unknown | |
| 7442918 | Mycoplasma pneumoniae | S(7) | 8 | Adhesin P1, group 2 variant precursor | Adhesion | |
| 15639317 | Treponema pallidum subsp. pallidum str. Nichols | S(11) | * | 7 | Outer membrane protein | Unknown |
| 7443057 | Salmonella typhimurium | P(9) | 8 | Virulence-associated protein mkaA | Unknown | |
| 22979423 | Ralstonia metallidurans | H(7) | * | 7 | Putative GTPases | Enzyme |
| 23037072 | Oenococcus oeni | S(8) | 25 | Membrane carboxypeptidase | Enzyme | |
| 21231078 | Xanthomonas campestris pv. campestris str. ATCC 33913 | G(13) | * | 6 | Unknown acidic aa rich protein | Unknown |
| 19745410 | Streptococcus pyogenes | G(9) | * | 4 | Hypothetical protein spyM18_0265 | Unknown |
| 23108546 | Novosphingobium aromaticivorans | P(12) | * | 4 | Translation initiation factor 2 | Translation |
| 15596494 | Pseudomonas aeruginosa | H(14) | * | 2 | Probable metal transporter | Transport |
| 548937 | Clostridium thermocellum | G(19) | * | 2 | Cell surface glycoprotein 1 precursor | Adhesion |
| 22978658 | Ralstonia metallidurans | G(7) | * | 2 | Translation initiation factor 2 | Translation |
| 15606084 | Aquifex aeolicus | H(7) | * | 2 | Hydrogenase expression/formation protein B | Enzyme |
| 15922873
|
Sulfolobus tokodaii
|
T(17)
|
*
|
2
|
Hypothetical protein ST2539 | Transport
|
-
↵* Putative eukaryote homologs, (+) the putative eukaryote homologs contain the repeat or an equivalent amino acid rich region
