Table 1.
Number of homopeptide repeats and RCPs in GENPEPT, Eukaryotes, and Prokaryotes
|
|
GENPEPT |
Eukaryote |
Prokaryote |
Other (viruses/environmental sequences) |
||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
Repeats |
Proteins |
Repeats |
Proteins |
Repeats |
Proteins |
Repeats |
Proteins |
||||
| Alanine | 6132 | 5045 | 5465 | 4425 | 251 | 250 | 416 | 370 | ||||
| Valine | 149 | 117 | 94 | 83 | 9 | 9 | 46 | 25 | ||||
| Leucine | 1638 | 1602 | 1446 | 1426 | 70 | 70 | 122 | 106 | ||||
| Isoleucine | 57 | 56 | 34 | 33 | 3 | 3 | 20 | 20 | ||||
| Proline | 4837 | 3931 | 4157 | 3333 | 217 | 184 | 463 | 414 | ||||
| Methionine | 27 | 22 | 19 | 18 | 0 | 0 | 8 | 4 | ||||
| Phenylalanine | 196 | 186 | 175 | 172 | 1 | 1 | 20 | 13 | ||||
| Tryptophan | 3 | 3 | 3 | 3 | 0 | 0 | 0 | 0 | ||||
| Glycine | 5981 | 5020 | 5002 | 4168 | 310 | 281 | 669 | 571 | ||||
| Serine | 6383 | 5463 | 5424 | 4742 | 378 | 258 | 581 | 463 | ||||
| Threonine | 2997 | 2415 | 2492 | 1984 | 63 | 59 | 442 | 372 | ||||
| Cystine | 64 | 52 | 38 | 38 | 0 | 0 | 26 | 14 | ||||
| Asparagine | 7126 | 3731 | 6962 | 3597 | 31 | 29 | 133 | 105 | ||||
| Glutamine | 8334 | 5699 | 8022 | 5464 | 52 | 51 | 260 | 184 | ||||
| Tyrosine | 56 | 51 | 39 | 38 | 4 | 4 | 13 | 9 | ||||
| Aspartic Acid | 1835 | 1707 | 1554 | 1451 | 34 | 34 | 247 | 222 | ||||
| Glutamic Acid | 4779 | 4302 | 4334 | 3912 | 67 | 61 | 378 | 329 | ||||
| Lysine | 2081 | 1926 | 1920 | 1774 | 25 | 25 | 136 | 127 | ||||
| Arginine | 751 | 714 | 462 | 443 | 60 | 57 | 229 | 214 | ||||
| Histidine | 1140 | 1061 | 1049 | 971 | 32 | 32 | 59 | 58 | ||||
| Total
|
54,566
|
37,355
|
48,691
|
32,628
|
1607
|
1388
|
4268
|
3339
|
||||
