Whole genome shotgun sequencing of Brassica oleracea and its application to gene discovery and annotation in Arabidopsis

Table 4.

Gene models created or modified based on this study


Locus

Annotation

No. exons

Change category
At2g33793.1 Expressed protein 8 New gene
At2g14635.1 Expressed protein 2 New gene
At2g27035.1 Plastocyanin-like domain-containing protein 2 New gene
At2g07787.1 Expressed protein 2 New gene
At2g07784.1 Pseudogene, similar to reverse transcriptase 1 New gene
At1g52315.1 Expressed protein 6 New gene
At3g60935.1 Gypsy-like retrotransposon family 1 New gene
At3g21465.1 Expressed protein 4 New gene
At3g19025.1 Pseudogene, similar to ethylene-induced esterase 1 New gene
At4g01915.1 Expressed protein 4 New gene
At4g01915.2 Expressed protein 3 New gene
At4g23882.1 Heavy metal–associated domain-containing protein 4 New gene
At2g40085.1 Expressed protein 3 New gene
At2g07785.1 NADH-ubiquinone oxidoreductase, putative 1 New gene
At4g27415.1 Expressed protein 2 New gene
At4g27415.2 Expressed protein 1 New gene
At2g28625.1 Expressed protein 2 New gene
At1g59865.1 Expressed protein 3 New gene
At1g59865.2 Expressed protein 3 New gene
At1g77885.1 Expressed protein 1 New gene
At3g07425.1 Expressed protein 1 New gene
At4g11655.1 Transmembrane protein, putative 3 New gene
At4g23420.2 Short-chain dehydrogenase/reductase (SDR) family protein 9 New splice variant of existing gene
At4g34310.2 Expressed protein 8 New splice variant of existing gene
At2g30620.1 Histone H1.2 2 Updated existing gene
At2g07706.1 Expressed protein 7 Updated existing gene
At2g07729.1 Copia-like retrotransposon family 1 Updated existing gene
At2g07715.1 Ribosomal protein L2, putative 1 Updated existing gene
At2g07716.1 Pseudogene, similar to orfx 1 Updated existing gene
At1g29520.1 AWPM-19-like membrane family protein 4 Updated existing gene
At4g34310.1 Expressed protein 10 Updated existing gene
At3g60720.1 Receptor-like protein kinase-related 3 Updated existing gene
At1g28080.1 Expressed protein 3 Updated existing gene
At4g27040.1 Expressed protein 11 Updated existing gene
At1g04660.1 Glycine-rich protein 1 Updated existing gene
At1g61680.1 Terpene synthase/cyclase family protein 7 Updated existing gene
At1g28310.1 Dof-type zinc finger domain-containing protein 1 Updated existing gene
At4g19180.1 Nucleoside phosphatase family protein/GDA1/CD39 family protein 3 Updated existing gene
At4g23420.1
Short-chain dehydrogenase/reductase (SDR) family protein
8
Updated existing gene

This Article

  1. Genome Res. 15: 487-495

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