Table 1.
Number, mean match length, and standard deviation of high scoring pairs (HSPs) and CAGS
|
HSPs/CAGS |
Number |
Mean length (bp) |
Standard deviation (bp) |
|---|---|---|---|
| HSPs (before filtering) | 10.27 × 106 | 51 | 69 |
| HSPs (after filtering) | 2.75 × 106 | 114 | 86 |
| CAGS | |||
| Genic | 1.69 × 105 | 195 | 246 |
| Intergenic | 6.04 × 104 | 101 | 115 |
| Total
|
2.30 × 105
|
170
|
223
|
-
The HSPs statistics are derived before and after filtering the BLASTZ output using 60% identity and 40-bp match length cut-off values.
