Table 2.
Comparison of the gerbera UniGene collection with other sequence collections from whole genomes, partial genomes or large EST projects
|
Challenge |
Matches to database (%) |
Unique to database |
|---|---|---|
| Arabidopsis thaliana proteome | 4799 (59.3) | 11 |
| Oryza sativa proteome | 1252 (15.5) | 0 |
| Populus trichocarpa genome | 798 (9.9) | 2 |
| Medicago truncatula BAC collection | 2132 (26.3) | 13 |
| Pooled Asterid UniGene sequences | 4652 (57.4) | 373 |
| Pooled Eurosid sequences | 3355 (41.4) | 25 |
| Pooled Caryophyllid sequence | 1612 (20.0) | 1 |
| Pooled Monocot sequences | 1819 (22.5) | 12 |
| GenBank sequence database | 4867 (60.1) | 46 |
| Unassigned Gerbera sequences
|
|
1656
|
-
Gerbera UniGene sequences were mapped to the query databases using a BLAST algorithm, and the results were filtered arbitrarily at 1e-10. The number of gerbera sequences that can be mapped to the query collection is shown along with this value, expressed as a percentage of all gerbera sequences. Also shown is the number of sequences that are unique to the query database and have no homolog elsewhere within the experiment.
