Table 3.
Distribution of domains in the fly proteome, interacting proteins, and SID
|
|
Drosophila proteome |
Proteins in data set |
SID in data set |
||||
|---|---|---|---|---|---|---|---|
| With TM | 20% | 205 | 12%a | 105 | 6%a,b | ||
| With SP | 21% | 247 | 14%a | 85 | 5%a,b | ||
| With InterPro domain | 78% | 1258 | 73%a | 1024 | 62%a,b | ||
| Total
|
|
1727
|
|
1651
|
|
||
-
Transmembrane (TM) segments (Krogh et al. 2001), signal peptide (SP) (Nielsen et al. 1997), and InterPro domains (Ashburner and Lewis 2002) were predicted from the primary sequences of the proteins in the present data set and the complete Drosophila proteome. Mapped domains were then compared with the SID.
-
↵a Significantly different (p < 0.05) from representation in Drosophila proteome.
-
↵b Significantly different (p < 0.05) from representation in interacting proteins.
