Table 4.
Dog ESTs that contain SINEC_Cf sequences
|
EST ID |
Start |
End |
Orientation |
Type |
EST ID |
Start |
End |
Orientation |
Type |
EST ID |
Start |
End |
Orientation |
Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| BI395282 | 100 | 292 | (+) | 1 | CK999028 | 9 | 191 | (–) | 1 | CF411877 | 509 | 701 | (+) | 2 |
| BI396013 | 247 | 428 | (+) | 1 | CN000189 | 1 | 200 | (–) | 1 | CK997835 | 373 | 553 | (–) | 2 |
| BI817000 | 122 | 307 | (+) | 1 | CN000259 | 1 | 185 | (–) | 1 | CN000198 | 540 | 735 | (+) | 2 |
| BM536771 | 134 | 316 | (–) | 1 | CN000862 | 1 | 198 | (–) | 1 | CN001701 | 354 | 549 | (–) | 2 |
| BM538738 | 29 | 206 | (–) | 1 | CN003480 | 9 | 177 | (–) | 1 | CN003009 | 132 | 323 | (+) | 2 |
| BM540896 | 1 | 178 | (–) | 1 | CN003481 | 52 | 232 | (+) | 1 | CN003100 | 198 | 370 | (–) | 2 |
| BQ091505 | 75 | 251 | (+) | 1 | CN004223 | 4 | 186 | (–) | 1 | CN003272 | 372 | 553 | (+) | 2 |
| BQ091808 | 34 | 230 | (–) | 1 | CO615070 | 1 | 177 | (–) | 1 | CN003734 | 467 | 653 | (+) | 2 |
| BQ233944 | 258 | 445 | (+) | 1 | CO618415 | 1 | 170 | (–) | 1 | CN003833 | 466 | 649 | (+) | 2 |
| BQ233951 | 80 | 248 | (+) | 1 | CO622584 | 1 | 192 | (–) | 1 | CN004818 | 224 | 406 | (–) | 2 |
| BQ234215 | 272 | 443 | (+) | 1 | CO622645 | 1 | 184 | (–) | 1 | CN005854 | 337 | 520 | (+) | 2 |
| BQ234327 | 32 | 200 | (+) | 1 | CO624201 | 14 | 199 | (–) | 1 | CO620822 | 82 | 253 | (–) | 2 |
| BQ234548 | 80 | 248 | (+) | 1 | CO631931 | 1 | 181 | (–) | 1 | CO630670 | 115 | 296 | (+) | 2 |
| BQ235019 | 404 | 574 | (+) | 1 | CO633032 | 16 | 212 | (–) | 1 | CO688822 | 181 | 367 | (+) | 2 |
| BQ235154 | 401 | 585 | (+) | 1 | CO633878 | 19 | 187 | (–) | 1 | CO708098 | 261 | 444 | (+) | 2 |
| BQ235636 | 335 | 521 | (+) | 1 | CO634532 | 1 | 173 | (–) | 1 | BM536886 | 187 | 337 | (–) | 3 |
| BQ235876 | 129 | 321 | (+) | 1 | CO635086 | 1 | 173 | (–) | 1 | BM539513 | 338 | 459 | (–) | 3 |
| BQ788275 | 291 | 460 | (+) | 1 | CO677843 | 1 | 171 | (–) | 1 | BM540124 | 47 | 198 | (–) | 3 |
| BQ788475 | 291 | 465 | (+) | 1 | Z97735 | 3 | 192 | (–) | 1 | BQ234114 | 244 | 395 | (–) | 3 |
| BU744447 | 60 | 271 | (–) | 1 | Z97747 | 1 | 180 | (–) | 1 | BU749657 | 397 | 532 | (–) | 3 |
| BU744716 | 70 | 232 | (–) | 1 | Z97810 | 30 | 213 | (–) | 1 | BU751410 | 37 | 167 | (–) | 3 |
| BU744952 | 61 | 227 | (–) | 1 | BI389234 | 124 | 312 | (–) | 2 | CK996159 | 35 | 156 | (–) | 3 |
| BU745150 | 87 | 273 | (–) | 1 | BM538367 | 123 | 312 | (–) | 2 | CK996423 | 275 | 436 | (+) | 3 |
| BU749508 | 66 | 248 | (–) | 1 | BM541044 | 246 | 428 | (+) | 2 | CN002508 | 157 | 318 | (–) | 3 |
| BU751148 | 61 | 243 | (–) | 1 | BM735692 | 178 | 358 | (–) | 2 | CO629118 | 58 | 205 | (+) | 3 |
| BU751489 | 114 | 297 | (–) | 1 | BQ234408 | 316 | 500 | (+) | 2 | CO668671 | 394 | 545 | (+) | 3 |
| CF406750 | 65 | 260 | (–) | 1 | BQ235081 | 316 | 500 | (+) | 2 | CO675560 | 265 | 414 | (+) | 3 |
| CF407503 | 69 | 250 | (–) | 1 | BQ235579 | 204 | 335 | (–) | 2 | CO675838 | 117 | 270 | (+) | 3 |
| CF408296 | 58 | 245 | (–) | 1 | BU750849 | 192 | 398 | (+) | 2 | CO684930 | 118 | 267 | (+) | 3 |
| CF408332 | 59 | 246 | (–) | 1 | BU751135 | 148 | 345 | (+) | 2 | BF228953 | 25 | 193 | (+) | 4 |
| CF409934 | 107 | 310 | (–) | 1 | BU751296 | 557 | 726 | (–) | 2 | BF228988 | 18 | 194 | (+) | 4 |
| CF410986 | 145 | 327 | (–) | 1 | BU751297 | 324 | 492 | (+) | 2 | BQ234445 | 5 | 187 | (+) | 4 |
| CF411174 | 218 | 411 | (–) | 1 | CF406935 | 280 | 463 | (+) | 2 | BQ234448 | 10 | 146 | (+) | 4 |
| CF413125 | 130 | 324 | (–) | 1 | CF406941 | 595 | 755 | (–) | 2 | BQ235047 | 9 | 143 | (+) | 4 |
| CK996008 | 4 | 199 | (–) | 1 | CF408437 | 286 | 452 | (+) | 2 | BQ235092 | 10 | 150 | (+) | 4 |
| CK996233 | 93 | 277 | (–) | 1 | CF409696 | 259 | 439 | (–) | 2 | BQ235470 | 9 | 144 | (+) | 4 |
| CK997330 | 1 | 181 | (–) | 1 | CF409992 | 367 | 556 | (+) | 2 | BQ235629 | 9 | 191 | (+) | 4 |
| CK997507 | 3 | 174 | (–) | 1 | CF410165 | 274 | 451 | (–) | 2 | BQ235644 | 9 | 169 | (+) | 4 |
| CK997864 | 1 | 172 | (–) | 1 | CF410277 | 296 | 489 | (–) | 2 | BQ290082 | 9 | 136 | (+) | 4 |
| CK998336
|
23
|
191
|
(–)
|
1
|
CF411091
|
230
|
412
|
(+)
|
2
|
CK995704
|
1
|
162
|
(+)
|
4
|
-
Each EST is represented by its GenBank accession number, the start and end coordinates of the SINEC_Cf sequence within the EST, the orientation of the SINEC_Cf sequence (+/–), and the type of insertion (1–4). Four types of insertion were distinguished. A complete SINEC_Cf sequence was located at either the 3′-end of the cDNA (type 1) or within the cDNA sequence (type 2). Partial SINEC_Cf sequences that have arisen from the use of splice acceptor sites within the element were termed type 3. Finally, there were ESTs that consist entirely of SINEC_Cf sequence (type 4).
