Short interspersed elements (SINEs) are a major source of canine genomic diversity

Table 3.

Distribution of SINEC_Cf repeats and bimorphic SINEC_Cf insertions (bSINEC_Cf) among dog chromosomes and annotated genes
SINEC_Cf
bSINEC_Cf
Annotated genes
Chromosome
 Length (Mb)
 No.
 per Mb
 No.
 per Mb
 No.
 % with SINEC_Cf
 % with bSINEC_Cf
   1 124.898 4520 36.2 516 4.1 1058 45.4 11.5
   2 87.725 3125 35.6 373 4.3 672 52.7 14.9
   3 95.080 3116 32.8 398 4.2 457 55.6 16.2
   4 91.326 3183 34.9 383 4.2 521 49.3 14.2
   5 92.065 3103 33.7 360 3.9 916 43.7 9.9
   6 79.106 2938 37.1 332 4.2 805 48.1 12.3
   7 83.037 3054 36.8 338 4.1 586 58.0 15.4
   8 77.375 2931 37.9 452 5.8 567 51.1 16.6
   9 53.643 2347 43.8 312 5.8 846 44.8 13.4
10 72.717 2720 37.4 341 4.7 600 53.5 16.0
11 75.770 2856 37.7 316 4.2 480 49.2 11.9
12 75.456 3048 40.4 399 5.3 539 46.6 16.0
13 66.160 2124 32.1 257 3.9 348 48.6 12.6
14 63.550 2261 35.6 269 4.2 360 52.8 15.8
15 67.238 2626 39.1 264 3.9 461 52.5 12.1
16 60.308 2066 34.3 251 4.2 388 47.9 14.9
17 66.886 2521 37.7 326 4.9 545 49.2 13.4
18 66.174 2208 33.4 278 4.2 851 33.5 7.3
19 56.914 1978 34.8 272 4.8 176 58.0 18.2
20 61.173 2381 38.9 282 4.6 884 39.6 9.3
21 53.028 1896 35.8 268 5.1 408 44.9 15.4
22 64.236 2350 36.6 324 5.0 205 52.7 20.5
23 55.586 2000 36.0 273 4.9 290 64.5 20.7
24 50.732 1810 35.7 267 5.3 487 45.2 14.2
25 54.437 1922 35.3 271 5.0 379 49.3 17.2
26 41.010 1668 40.7 244 5.9 425 47.5 15.8
27 49.087 2089 42.6 267 5.4 471 48.2 16.3
28 42.450 1479 34.8 166 3.9 310 57.1 14.2
29 44.860 1528 34.1 180 4.0 185 57.8 14.6
30 43.165 1708 39.6 199 4.6 361 59.8 19.1
31 41.216 1350 32.8 204 4.9 173 48.6 19.7
32 41.834 1834 43.8 252 6.0 204 60.3 27.0
33 34.471 1328 38.5 198 5.7 205 65.4 25.9
34 45.233 1389 30.7 216 4.8 211 48.8 19.4
35 29.507 875 29.7 146 4.9 168 44.0 18.5
36 33.961 1172 34.5 146 4.3 163 58.3 18.4
37 33.897 1118 33.0 164 4.8 207 56.0 16.4
38 26.492 863 32.6 146 5.5 193 44.0 14.5
X 126.913 5429 42.8 356 2.8 735 44.6 8.2
Un
91.063
3666
40.3
259
2.8
361
21.6
5.0

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  1. Genome Res. 15: 1798-1808

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