Table 1.

Some sources of functional genomics data collections for S. cerevisiae

Database	Data type	References	URL
SGD	Several	Ball et al. 2001	http://www.yeastgenome.org
CYGD/MIPS	Several	Guldener et al. 2005	http://mips.gsf.de/genre/proj/yeast/
bioGRID	Genetic/physical interaction	Breitkreutz et al. 2003	http://biodata.mshri.on.ca/yeast_grid/
BIND	Genetic/physical interaction	Bader et al. 2003	http://www.blueprint.org/bind/bind.php
DIP	Physical interaction	Xenarios et al. 2002	http://dip.doe-mbi.ucla.edu/dip/Main.cgi
MINT	Physical interaction	Zanzoni et al. 2002	http://160.80.34.4/mint/
IntAct	Physical interaction	Hermjakob et al. 2004b	http://www.ebi.ac.uk/intact/index.html
Deletion Consortium	Phenotype analysis	Giaever et al. 2002; Winzeler et al. 1999	http://www-sequence.stanford.edu/group/yeast_deletion_project/data_sets.html
GEO	MicroArray	Edgar et al. 2002	http://www.ncbi.nlm.nih.gov/geo/
Array Express	MicroArray	Brazma et al. 2003	http://www.ebi.ac.uk/arrayexpress/
YMGV	MicroArray	Marc et al. 2001	http://www.transcriptome.ens.fr/ymgv/
SMD	MicroArray	Gollub et al. 2003	http://smd.stanford.edu/
OPD	Mass Spec/Proteomics	Prince et al. 2004	http://bioinformatics.icmb.utexas.edu/OPD

List of the major sources of yeast functional genomics data; in addition to the main SGD site, yeast genome data are also distributed via SGD Lite (http://sgdlite.princeton.edu), a lightweight yeast genome database, which is built from GMOD components and can be downloaded and installed locally.

Changing perspectives in yeast research nearly a decade after the genome sequence