Table 5.
Comparison of running time in seconds between HAP and PHASE
|
|
Mean |
Standard deviation |
Minimum |
Maximum |
||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Number of SNPs |
HAP |
PHASE |
HAP |
PHASE |
HAP |
PHASE |
HAP |
PHASE |
||||
| 10 | 0.06 | 19.12 | 0.03 | 8.88 | 0.03 | 12.08 | 0.10 | 37.74 | ||||
| 20 | 0.56 | 109.71 | 0.30 | 68.78 | 0.23 | 46.24 | 1.08 | 237.78 | ||||
| 30 | 1.10 | 327.55 | 0.55 | 257.59 | 0.54 | 99.76 | 2.24 | 887.82 | ||||
| 40 | 1.53 | 833.99 | 0.61 | 831.93 | 0.80 | 165.57 | 2.58 | 2906.84 | ||||
| 50 | 1.99 | 1643.49 | 0.75 | 1454.08 | 1.02 | 581.80 | 3.32 | 5013.80 | ||||
| 60 | 2.45 | 3719.40 | 0.83 | 4352.68 | 1.19 | 915.95 | 3.74 | 14554.47 | ||||
| 70 | 3.02 | 5931.03 | 0.91 | 5680.70 | 1.56 | 1212.59 | 4.48 | 18593.30 | ||||
| 80 | 3.43 | 8071.75 | 1.00 | 7495.58 | 1.74 | 1774.35 | 5.12 | 26016.98 | ||||
| 90 | 3.82 | 10585.10 | 1.10 | 9307.13 | 1.90 | 2167.37 | 5.72 | 32363.89 | ||||
| 100 | 4.42 | 13409.43 | 1.25 | 12113.96 | 2.16 | 2634.38 | 6.53 | 40183.36 | ||||
| 110 | 4.86 | 16082.93 | 1.21 | 12598.09 | 2.66 | 6127.91 | 6.83 | 44603.33 | ||||
| 120 | 5.25 | 20283.20 | 1.20 | 14935.60 | 3.31 | 7756.14 | 7.14 | 54431.03 | ||||
| 130 | 5.70 | 25249.62 | 1.35 | 18740.87 | 3.73 | 9636.97 | 8.09 | 63775.21 | ||||
| 140 | 6.16 | 30643.41 | 1.39 | 18292.52 | 4.19 | 12226.41 | 8.53 | 69463.15 | ||||
| 150 | 6.63 | 35768.83 | 1.46 | 20482.31 | 4.79 | 14280.62 | 9.05 | 74459.95 | ||||
| 160 | 7.05 | 42161.60 | 1.49 | 23714.27 | 5.29 | 19106.80 | 9.73 | 91346.27 | ||||
| 170 | 7.53 | 51597.25 | 1.59 | 30670.41 | 5.44 | 20676.32 | 10.4 | 113281.51 | ||||
| 180
|
8.09
|
63743.02
|
1.72
|
37621.29
|
5.72
|
31889.18
|
11.08
|
138096.67
|
||||
-
The running time is measured by running both methods from 10 different positions in chromosome 19, with different length of genotypes. Intel Xeon 3.20 GHz CPU is used in the measurement.
