Table 2.

Correlation between chromosomal organization and linkage disequilibrium in windows of 100, 500, and 1000 kb

	CEU sample					YRI sample
Chromosome organization	100 kb	500 kb	1000 kb	100 kb	500 kb	1000 kb	100 kb	500 kb	1000 kb
Within 5 Mb of centromere	0.13*	0.16*	0.17*	0.13*	0.17*	0.19*	0.12*	0.15*	0.17*
Within 10 Mb of centromere	0.10*	0.12*	0.14*	0.11*	0.14*	0.16*	0.09*	0.11*	0.13*
Within 15 Mb of centromere	0.08*	0.10*	0.12*	0.09*	0.12*	0.14*	0.07*	0.09*	0.11*
Within 5 Mb of telomere	-0.15*	-0.19*	-0.21*	-0.14*	-0.18*	-0.21*	-0.14*	-0.17*	-0.20*
Within 10 Mb of telomere	-0.21*	-0.26*	-0.29*	-0.20*	-0.26*	-0.29*	-0.19*	-0.25*	-0.27*
Within 15 Mb of telomere	-0.23*	-0.29*	-0.32*	-0.22*	-0.28*	-0.32*	-0.22*	-0.27*	-0.31*
Within 5 Mb of heterochromatin	0.09*	0.11*	0.12*	0.09*	0.12*	0.14*	0.09*	0.11*	0.13*
Within 10 Mb of heterochromatin	0.08*	0.09*	0.11*	0.08*	0.10*	0.13*	0.08*	0.10*	0.12*
Within 15 Mb of heterochromatin	0.05*	0.06*	0.07*	0.06*	0.08*	0.10*	0.05*	0.06*	0.08*
Large genomic duplications	0.07*	0.07*	0.06*	0.07*	0.06*	0.05	0.07*	0.07*	0.06*
Large genomic duplications (cis)	0.05*	0.04*	0.03	0.06*	0.03	0.01	0.04*	0.03	0.02
Large genomic duplications (trans)	0.06*	0.10*	0.09*	0.07*	0.09*	0.09*	0.07*	0.10*	0.10*

Sequence features in regions of weak and strong linkage disequilibrium