Table 1.
Number of regions within ENCODE targets with properties associated with gene promoters
|
Type of region |
Number of regions exceeding threshold |
Number of promoters that overlap regions |
Percentage of promoters that overlap regions |
|---|---|---|---|
| Promoters | 289 | 289 | 100 |
| DNase HSs | 230 | 71 | 25 |
| Bound by RNA polymerase | 2121 | 175 | 61 |
| Bound by TAF1 | 573 | 153 | 53 |
| MCS | 23,148 | 179 | 62 |
| phastConsElements | 7479 | 139 | 48 |
| RP
|
16,170
|
161
|
56
|
-
(DNase I HSs) DNase I hypersensitive sites; (MCS) multispecies conserved sequence; (phastConsElements) DNA sequence whose multispecies alignment falls within the 5% most highly conserved genomic intervals in human; (RP) regulatory potential.
