Table 3.
Sequence compositions of HMPR, HC, MF, and UF libraries
|
|
HMPR |
|
|
|
||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Libraries studied |
HpaII-1 |
HpaII-2 |
HpyCH4IV-1 |
HpyCH4IV-2 |
Total |
HC |
MF |
UF |
||||
| No. of sequencesa | 700 | 736 | 683 | 679 | 2798 | 1000b | 1000b | 1000b | ||||
| Known genes (%) | 16.6 | 26.0 | 23.7 | 26.0 | 23.1 | 23.4 | 33.7 | 3.6 | ||||
| Known retroelements (%) | 3.4 | 7.1 | 4.0 | 2.3 | 4.2 | 17.1 | 20.6 | 72.7 | ||||
| Other repetitive DNA (%) | 4.9 | 4.1 | 2.2 | 4.9 | 4.0 | 4.7 | 1.9 | 5.9 | ||||
| Organellar DNA (%)c | 10.0 | 9.4 | 11.4 | 10.9 | 10.3 | 0.1 | 0.2 | 0.2 | ||||
| Unknown sequences (%)
|
65.1
|
53.5
|
58.7
|
55.9
|
58.3
|
54.7
|
43.6
|
17.6
|
||||
