Table 2.
Proteins involved in cold/salt adaptation
|
Locus |
Proteins size |
Gene name |
Chr. |
Description |
|---|---|---|---|---|
| Cold-shock protein | ||||
| PSHAa0109 | 463 | dbpA | 1 | Putative ATP-dependent RNA helicase; putative cold-shock protein |
| PSHAa0114 | 421 | rhlB | 1 | ATP-dependent RNA helicase, putative cold-shock protein |
| PSHAa0990 | 617 | deaD | 1 | ATP-dependent RNA helicase, cold-shock protein A |
| PSHAa1184 | 68 | cspC | 1 | Cold-shock protein, transcription antiterminator |
| PSHAa1222 | 209 | grpE | 1 | Putative member of the DnaK/DnaJ/GrpE foldase complex (heat/cold-shock protein; involved in thermal regulation of folding) |
| PSHAa1600 | 204 | 1 | Putative cold-shock DNA-binding domain | |
| PSHAa1726 | 73 | cspD | 1 | Nucleic acid-binding domain, cold-shock RNA chaperone |
| PSHAa2978/2979/2980 | 70 | cspE | 1 | RNA chaperone, transcription antiterminator |
| PSHAa2981 | 750 | 1 | Cold-shock RNAse R | |
| PSHAb0078 | 63 | cspX | 2 | Cold-shock protein |
| PSHAb0210 | 491 | cstA | 2 | Cold-shock regulated carbon starvation protein A |
| PSHAb0384/0386/0387 | 70 | cspX | 2 | Cold-shock protein |
| PSHAb0516 | 171 | 2 | Putative cold-shock RNA methyltransferase | |
| Dioxygenases | ||||
| PSHAa0187 | 235 | 1 | Conserved protein of unknown function; putative dioxygenase | |
| PSHAa0570 | 140 | 1 | Conserved protein of unknown function; putative glyoxalase domain | |
| PSHAa0900 | 297 | tesB | 1 | Putative dioxygenase |
| PSHAa0904 | 372 | 1 | Putative dioxygenase | |
| PSHAa2137 | 365 | 1 | Putative protein with ferredoxin subunits; putative dioxygenase | |
| PSHAa2147 | 309 | 1 | Putative taurine dioxygenase | |
| PSHAa2168 | 351 | melA | 1 | 4-hydroxyphenylpyruvate dioxygenase (4HPPD) (HPD) (HPPDase) |
| PSHAa2449 | 158 | 1 | Conserved protein of unknown function; putative dioxygenase domain | |
| PSHAb0029 | 167 | 2 | Putative enzyme; dioxygenase superfamily | |
| PSHAb0041 | 119 | 2 | Putative enzyme; dioxygenase superfamily | |
| PSHAb0115 | 128 | 2 | Putative enzyme; dioxygenase superfamily | |
| PSHAb0338 | 434 | hmgA | 2 | Homogentisate 1,2-dioxygenase |
| Fatty acids (desaturase) | ||||
| PSHAa0567 | 271 | 1 | Conserved protein of unknown function; putative sterol desaturase family protein | |
| PSHAa1269 | 351 | 1 | Putative fatty acid desaturase | |
| PSHAa2897 | 378 | 1 | Putative long chain acyl-CoA desaturase | |
| PSHAb0225 | 264 | 2 | Putative C-5 sterol desaturase | |
| Salt adaptation | ||||
| PSHAa0020 | 459 | trkA | 1 | Potassium transport inner membrane protein subunit; involved in osmoprotection |
| PSHAa0208 | 257 | cysQ | 1 | 3′,5′ adenosine diphosphate 3′ phosphatase, sodium sensing |
| PSHAa0325 | 188 | osmY | 1 | Putative hyperosmotically inducible periplasmic protein |
| PSHAa0326 | 53 | 1 | Putative low-temperature and salt-responsive protein | |
| PSHAa0396 | 273 | mscS | 1 | Putative mechanosensitive channel protein; protection against hypo-osmotic shock |
| PSHAa0687 | 255 | surE | 1 | Putative acid phosphatase SurE; protection against osmotic shock |
| PSHAa0833 | 512 | putP | 1 | Major sodium/proline symporter; protection against osmotic shock |
| PSHAa1072 | 522 | 1 | Putative glycine betaine transporter | |
| PSHAa1226 | 439 | 1 | Putative Na+/H+ antiporter | |
| PSHAa1436 | 531 | 1 | Putative choline/betaine transporter | |
| PSHAa1625 | 403 | 1 | Putative sodium ABC exporter, permease component | |
| PSHAa1626 | 263 | 1 | Putative sodium ABC exporter, ATP-binding component | |
| PSHAa1678 | 675 | prc | 1 | Periplasmic C-terminal protease with specificity for nonpolar C termini; protection against osmotic shock |
| PSHAa1679 | 213 | proQ | 1 | Putative post-translational activator of ProP expression; sensing osmotic shock |
| PSHAa2041 | 676 | 1 | Putative choline/betaine transporter | |
| PSHAa2202 | 144 | osmC | 1 | Osmotically inducible protein C; protection against oxidative stress |
| PSHAa2243 | 102 | bolA | 1 | Regulator involved in adaptation to osmotic shock |
| PSHAa2252 | 561 | 1 | Putative voltage-gated CIC-type chloride channel ClcA | |
| PSHAa2274 | 660 | mdoB | 1 | Putative phosphoglycerol transferase; shape adaptation to osmotic shock |
| PSHAa2849 | 434 | envZ | 1 | Sensor histidine kinase, senses osmolarity |
| PSHAa2850 | 240 | ompR | 1 | Response regulator for adaptation to osmolarity |
| PSHAb0106 | 576 | cvrA | 2 | Putative Na+/H+ antiporter; adaptation to hypo-osmotic shock |
| PSHAa0176 | 289 | 2 | Putative mechanosensitive channel protein; protection against hypo-osmotic shock | |
| PSHAb0127 | 1536 | gltB | 2 | Glutamate synthase, large subunit, GOGAT |
| PSHAb0128 | 497 | gltD | 2 | Glutamate synthase, small subunit |
| PSHAb0261 | 534 | betC | 2 | Putative choline dehydrogenase |
| PSHAb0357 | 639 | dnaK | 2 | Chaperone protein DnaK; involved in protection |
| Against osmotic shock | ||||
| PSHAb0381 | 129 | betC | 2 | Putative osmC-like protein |
| PSHAb0418 | 556 | betA | 2 | Putative choline dehydrogenase |
| PSHAb0419 | 500 | betB | 2 | NAD+-dependent betaine aldehyde dehydrogenase |
| PSHAb0420 | 197 | betI | 2 | Putative transcriptional repressor for the cellular response to osmotic stress |
| Against osmotic shock | ||||
| PSHAb0426 | 489 | 2 | Putative succinylglutamic semialdehyde dehydrogenase; may be involved in adaptation to high osmolarity | |
| PSHAb0427 | 345 | 2 | Putative arginine succinyltransferase; may be involved in adaptation to high osmolarity | |
| PSHAb0428 | 402 | 2 | Putative acetylornithine transaminase; may be involved in adaptation to high osmolarity | |
| Helicases [DEA(DH)] | ||||
| PSHAa0109 | 463 | dbpA | 1 | Putative ATP-dependent RNA helicase; putative cold-shock protein; could be specific for rRNA folding |
| PSHAa0114 | 421 | rhlB | 1 | ATP-dependent RNA helicase with nucleoside triP hydrolase domain, putative cold-shock protein |
| PSHAa0510 | 409 | srmB | 1 | ATP-dependent RNA helicase |
| PSHAa0641 | 433 | 1 | ATP-dependent RNA helicase (rhlE-like); DEAD-box protein family | |
| PSHAa0990 | 617 | deaD | 1 | ATP-dependent RNA helicase, cold-shock protein A |
| PSHAa1144 | 1298 | hrpA | 1 | Helicase, ATP-dependent |
| PSHAa1432 | 441 | srmB | 1 | ATP-dependent RNA helicase, DEAD box family |
| PSHAa1522 | 415 | 1 | Conserved protein of unknown function | |
| PSHAa1930 | 467 | rhlE | 1 | Putative ATP-dependent RNA helicase with P-loop hydrolase domain |
| PSHAa1991 | 692 | dinG | 1 | Putative ATP-dependent helicase DinG |
| PSHAa2216 | 809 | hrpB | 1 | ATP-dependent helicase |
| PSHAa2480 | 831 | rnr | 1 | RNase R, 3′-5′ exoribonuclease |
| PSHAa2572 | 608 | recQ | 1 | ATP-dependent DNA helicase |
| PSHAa2624 | 965 | hepA | 1 | RNA polymerase associated protein (ATP-dependent helicase HepA) |
| PSHAa2762 | 676 | rep | 1 | Rep helicase, a single-stranded DNA-dependent ATPase |
| PSHAa2983 | 435 | rhlE | 1 | DEAD-box protein family; putative ATP-dependent RNA helicase with P-loop hydrolase domain |
| PSHAb0003 | 1049 | 2 | Putative DNA helicase with DEAD/DEAH box helicase domain | |
| PSHAb0039 | 1352 | 2 | Putative protein with DEAD/DEAH box helicase domain | |
| PSHAb0119 | 649 | 2 | Putative ATP-dependent DNA helicase (recQ-like) | |
| PSHAb0411 | 434 | rhlE | 2 | Putative ATP-dependent RNA helicase with P-loop hydrolase domain; DEAD-box protein family |
| PSHAb0497
|
639
|
yoaA
|
2
|
Putative ATP-dependent helicase YoaA with nucleotide triphosphate hydrolase domain, SOS repair, DinG family
|
