Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags

Table 2.

Noncoding cDNA statistics


cDNA set

Total

Likely polyA signal

Upstream CpG island

Both poly A and CpG
Putative noncoding 4891 4401 (90%) 1012 (21%) 855 (18%)
HQNC set 757 583 (77%) 124 (16%) 93 (12%)
HQNC set mapped to assembled chromosomes 367 339 (92%) 57 (16%) 50 (14%)
Conserved in one of human/mouse/rat 67 61 (91%) 13 (19%) 12 (18%)
Conserved in all three of human/mouse/rat
43
41 (95%)
11 (26%)
10 (23%)

This Article

  1. Genome Res. 15: 174-183

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