Summary of chicken cDNA clone statistics
|
EC contigs selected for sequencing |
22,607 |
| Coding | 16,300 |
| Non-coding | 6307 |
| Clones attempteda | 23,115 |
| Clones accepted by EMBL database | 19,626 (85%) |
| Average length | 1006 bp |
| Number >1 Kb | 7967 |
| Number >2 Kb | 354 |
| Longest clone (ChEST76n19) | 5339 bp |
| Clones annotated at 07/07/04 | 19,626 |
| Accepted putative coding cDNAs | 14,735 |
| That are spliced | 10,901 |
| Accepted putative noncoding cDNAs | 4891 |
| That are spliced | 1064 |
| Clones mapped to genomeb | 17,896 |
| Clones mapped to genomec | 18,519 |
| Clones mapped to Ensembl transcript | 12,211 |
| Putative antisense clonesd | 289 |
| Putative noncoding RNAse | 367 |
| Conserved noncoding clonesf
|
43
|
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↵a Multiple clones for some ECs were attempted when the most 5′ clone failed
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↵b Ninety-eight percent identity over minimum of 100 bp via BLASTN
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↵c Exonerate matches with a rawscore > 1000
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↵d cDNAs found antisense to ensembl genes with at least five component ESTs in corresponding EST contig, and passing reverse clone quality control tests
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↵e Clones mapped to assembled genome, but not found to be within 5 Kb of an Ensembl chicken gene
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↵f Clones found in set e that which have a sequence that is also conserved in the human, mouse, and rat genomes
