Evolution and functional classification of vertebrate gene deserts

Table 2.

Enrichment in Gene Ontology categories for stable and variable gene deserts


Category

Enrichment

Classification
Stable gene deserts
   Regulation of metabolism 4.4 biological process
   Transcription factor activity 4.2 molecular function
   Transcription coactivator activity 4.0 molecular function
   Regulation of biosynthesis 3.8 biological process
   Transcription regulator activity 3.6 molecular function
   Transcription factor binding 3.2 molecular function
   DNA binding 2.8 molecular function
   Regulation of transcription 2.8 biological process
   Transcription 2.7 biological process
   Development 2.0 biological process
Variable gene deserts
   Glutamate receptor activity 7.8 molecular function
   Inotropic glutamate receptor activity 7.7 molecular function
   Amine receptor activity 6.2 molecular function
   Sulfotransferase activity 4.2 molecular function
   Cell adhesion 3.0 biological process
   Transmission of nerve impulse 2.8 biological process
   Neuromuscular physiological process 2.8 biological process
   Synaptic transmission 2.7 biological process
   Calcium ion binding 2.2 molecular function
   Organogenesis 1.9 biological process
   Morphogenesis 1.7 biological process
   Development 1.7 biological process
   Cell communication
1.6
biological process
  • The statistical significance of the reported numbers is supported by the P-values <10-5 as quantified in a comparison with the purely-by-chance expectations.

This Article

  1. Genome Res. 15: 137-145

Preprint Server