Table 1.
Summary of initial data and filtered orthologs sets.
|
(A) Initial data sets |
||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Ensembla |
UCSC genome browserb RefSeqc |
|||||||||||
| Species
|
Version
|
Genes
|
Introns
|
Version
|
Genes
|
Introns
|
||||||
| humand | v19.34a | 33,633 | 284,125 | HGv16/NCBI34 | 21,744 | 206,814 | ||||||
| mousee | v19.30 | 30,665 | 218,163 | MGSCv4/NCBI32 | 17,988 | 139,258 | ||||||
| ratf | v19.3a | 28,545 | 192,459 | RGSCv3.1 | 4877 | 43,393 | ||||||
| chickeng | v22.1.1 | 28,491 | 252,226 | CGSCv2 | 1496 | 12,632 | ||||||
|
(B) Filtered orthologs |
||||||||
|---|---|---|---|---|---|---|---|---|
|
|
Sets
|
Genes
|
Introns
|
|
||||
| Total | human | 6043 | 48,939 | (out of 51,876) | ||||
| mouse | 5680 | 45,543 | (out of 47,193) | |||||
| rat | 1847 | 13,929 | (out of 14,245) | |||||
| Orthologs | human/mouse | 5550 | 44,119 | |||||
| human/rat | 1737 | 13,259 | ||||||
| mouse/rat | 1416 | 9655 | ||||||
| Triads
|
human/mouse/rat
|
1283
|
8895
|
|
||||
-
(A) Initial data sets: the initial pool of genes/introns from which we filtered all the data sets for this work (aBirney et al. 2004; bKarolchik et al. 2003; cPruitt et al. 2003; dLander et al. 2001; eWaterston et al. 2002; fRat Genome Sequencing Project Consortium 2004; gInternational Chicken Genome Sequencing Consortium 2004).
-
(B) Filtered orthologs: the number of RefSeq orthologous genes and introns derived from these data sets.
