An SNP Resource for Rice Genetics and Breeding Based on Subspecies Indica and Japonica Genome Alignments

Table 2.

Nonrandom Distribution of Indica-Japonica Polymorphic Regions

		High polymorphism regions					Low polymorphism regions					All polymorphism regions
Chr	Length^a	Intervals^b	Contigs	Mb	Intervals^b	Contigs	Mb	Intervals^b	Contigs	Mb	% Chr	Moran's /^c
1	42.9	23	20	2.3	59	26	5.9	82	46	8.2	19.1%	0.372^***
2	35.5	23	22	2.3	48	19	4.8	71	41	7.1	20.0%	0.370^***
3	35.0	37	25	3.7	61	23	6.1	98	48	9.8	28.0%	0.499^***
4	34.4	70	38	7	79	27	7.9	149	65	14.9	43.3%	0.474^***
5	28.5	45	33	4.5	79	16	7.9	124	49	12.4	43.5%	0.489^***
6	29.9	68	33	6.8	58	18	5.8	126	51	12.6	42.1%	0.554^***
7	29.3	50	38	5	62	16	6.2	112	54	11.2	38.3%	0.433^***
8	27.6	41	30	4.1	45	14	4.5	86	44	8.6	31.1%	0.421^***
9	21.1	19	16	1.9	32	16	3.2	51	32	5.1	24.1%	0.307^***
10	22.4	12	11	1.2	16	8	1.6	28	19	2.8	12.5%	0.220^***
11	24.9	39	28	3.9	50	30	5	89	58	8.9	35.8%	0.294^***
12	26.9	59	34	5.9	58	24	5.8	117	58	11.7	43.5%	0.284^***
All	358.5	486	328	48.6	647	237	64.7	1133	565	113.3	31.6%

↵a Megabase.
↵b 100 kb.
↵c Measurement of global spatial autocorrelation; ^***indicates significance (P < 0.001).

This Article

Genome Res. 2004. 14: 1812-1819

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