Table 1.
Indica-Japonica Polymorphisms
|
Chromosome |
Lengtha |
POLY |
POLY/kbb |
SNP |
SNP/kbb |
INDEL |
INDEL/kbb |
cMc |
cM/100 kb |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42,904,173 | 56,815 | 1.32 (1.97) | 53,652 | 1.25 (1.86) | 3163 | 0.07 (0.11) | 182 | 0.42 |
| 2 | 35,514,782 | 48,937 | 1.38 (2.02) | 46,202 | 1.30 (1.91) | 2735 | 0.08 (0.11) | 158 | 0.44 |
| 3 | 35,023,388 | 43,674 | 1.25 (1.78) | 41,172 | 1.18 (1.68) | 2502 | 0.07 (0.10) | 166 | 0.48 |
| 4 | 34,446,165 | 31,759 | 0.92 (1.58) | 29,659 | 0.86 (1.48) | 2100 | 0.06 (0.10) | 130 | 0.38 |
| 5 | 28,498,211 | 30,361 | 1.07 (1.73) | 28,508 | 1.00 (1.62) | 1853 | 0.07 (0.11) | 122 | 0.43 |
| 6 | 29,923,250 | 31,613 | 1.06 (1.66) | 29,792 | 1.00 (1.57) | 1821 | 0.06 (0.10) | 124 | 0.42 |
| 7 | 29,275,636 | 33,200 | 1.13 (1.88) | 30,326 | 1.04 (1.71) | 2874 | 0.10 (0.16) | 119 | 0.41 |
| 8 | 27,648,541 | 29,884 | 1.08 (1.81) | 28,178 | 1.02 (1.71) | 1706 | 0.06 (0.10) | 121 | 0.44 |
| 9 | 21,127,180 | 25,312 | 1.20 (1.93) | 24,011 | 1.14 (1.84) | 1301 | 0.06 (0.10) | 94 | 0.44 |
| 10 | 22,432,522 | 25,383 | 1.13 (1.94) | 23,962 | 1.07 (1.83) | 1421 | 0.06 (0.11) | 84 | 0.37 |
| 11 | 24,871,670 | 26,747 | 1.08 (1.76) | 25,069 | 1.01 (1.65) | 1678 | 0.07 (0.11) | 118 | 0.47 |
| 12 | 26,881,443 | 25,213 | 0.94 (1.64) | 23,810 | 0.89 (1.55) | 1403 | 0.05 (0.09) | 110 | 0.41 |
| Total
|
358,546,961
|
408,898
|
1.13 (1.81)
|
384,431
|
1.06 (1.70)
|
24,557
|
0.07 (0.11)
|
1527
|
3.82
|
