Optimal Haplotype Block-Free Selection of Tagging SNPs for Genome-Wide Association Studies

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Figure 4
Figure 4

The x-axis shows the number of SNPs typed, and the y-axis shows the fraction of total informativeness or total number of SNPs correctly imputed in a leave-one-out experiment. The solid (upper) curve represents informativeness and the dashed (lower) curve shows the fraction of SNPs that are correctly imputed in a leave-one-out experiment. The data set used is the first 1000 SNPs of the Chromosome 21 data set of Patil et al. (2001) using the no-four-gamete violation definition of blocks and neighborhoods. Neighborhoods were restricted to have sizes no larger than 13.

This Article

  1. Genome Res. 14: 1633-1640

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