Haplotype and Missing Data Inference in Nuclear Families

Table 4.

Test of Input Capacity: Phasing 1000 Chromosomes of Length 1 Mb

Fraction missing data	Switch accuracy	Switch accuracy baseline	Missing call accuracy	Baseline missing call accuracy
0	0.9989 (0.00004)^a	0.889 (0.002)	—	—
0.05	0.9949 (0.00009)	0.865 (0.002)	0.974 (0.0004)	0.936 (0.001)
0.10	0.9902 (0.0002)	0.842 (0.002)	0.972 (0.0004)	0.932 (0.001)
0.15	0.9848 (0.0003)	0.819 (0.002)	0.969 (0.0005)	0.927 (0.001)