Haplotype and Missing Data Inference in Nuclear Families

Table 3.

Missing Call Accuracy in Genotyped Parent With Other Parent Missing

	10 Families			160 Families			320 Families
Children	MCA^a	BMCA^b	MCA	BMCA	MCA	BMCA
All sites^c
0	0.855 (0.003)	0.771 (0.004)	0.929 (0.001)	0.869 (0.002)	0.930 (0.001)	0.874 (0.002)
1	0.916 (0.002)	0.812 (0.003)	0.950 (0.0007)	0.894 (0.002)	0.948 (0.0007)	0.899 (0.002)
2	0.944 (0.002)	0.844 (0.004)	0.964 (0.0006)	0.914 (0.002)	0.964 (0.0005)	0.917 (0.001)
3	0.964 (0.002)	0.893 (0.004)	0.977 (0.0004)	0.940 (0.001)	0.976 (0.0003)	0.942 (0.001)
q < 0.10^c
0	0.812 (0.005)	0.646 (0.005)	0.889 (0.002)	0.647 (0.003)	0.881 (0.002)	0.642 (0.003)
1	0.923 (0.003)	0.707 (0.005)	0.938 (0.002)	0.717 (0.002)	0.932 (0.001)	0.711 (0.002)
2	0.951 (0.002)	0.763 (0.005)	0.960 (0.001)	0.770 (0.002)	0.959 (0.0009)	0.765 (0.002)
3	0.970 (0.002)	0.832 (0.005)	0.975 (0.0007)	0.840 (0.002)	0.974 (0.0005)	0.837 (0.002)

↵a Missing call accuracy (SEM).
↵b Baseline missing call accuracy (SEM).
↵c Allele frequency.

This Article

Published in Advance July 15, 2004, doi: 10.1101/gr.2204604 Genome Res. 2004. 14: 1624-1632

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