Haplotype and Missing Data Inference in Nuclear Families

Table 2.

Missing Call Accuracy for Two Parents

	10 Families			160 Families			320 Families
Children	MCA^a	BMCA^b	MCA	BMCA	MCA	BMCA
All sites^c
0	0.871 (0.003)	0.773 (0.004)	0.934 (0.001)	0.868 (0.002)	0.971 (0.0009)	0.874 (0.002)
1	0.944 (0.002)	0.794 (0.003)	0.969 (0.0006)	0.907 (0.002)	0.962 (0.0006)	0.911 (0.001)
2	0.969 (0.001)	0.893 (0.003)	0.978 (0.0004)	0.939 (0.001)	0.978 (0.0003)	0.942 (0.0009)
3	0.981 (0.001)	0.934 (0.003)	0.987 (0.0002)	0.963 (0.0007)	0.987 (0.0002)	0.965 (0.0006)
q > 0.10^c
0	0.842 (0.004)	0.649 (0.004)	0.917 (0.002)	0.644 (0.003)	0.912 (0.002)	0.642 (0.003)
1	0.946 (0.002)	0.746 (0.004)	0.953 (0.001)	0.747 (0.002)	0.952 (0.001)	0.746 (0.002)
2	0.972 (0.001)	0.841 (0.004)	0.973 (0.0008)	0.839 (0.002)	0.972 (0.0006)	0.837 (0.001)
3	0.982 (0.001)	0.903 (0.003)	0.984 (0.0004)	0.902 (0.0009)	0.984 (0.0004)	0.900 (0.001)

↵a Missing call accuracy (SEM).
↵b Baseline missing call accuracy (SEM).
↵c Minor allele frequency.

This Article

Published in Advance July 15, 2004, doi: 10.1101/gr.2204604 Genome Res. 2004. 14: 1624-1632

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