Stress-Induced DNA Duplex Destabilization (SIDD) in the E. coli Genome: SIDD Sites Are Closely Associated With Promoters

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Figure 5
Figure 5

The calculated distributions are shown of the numbers of sites of each of the four types (DIV, DTP, CON, and coding) that would overlap SIDD sites with Gm ≤ 2 if these 1448 SIDD sites were distributed at random. The results for DTP are shown in the upper left, for DIV in the upper right, for CON in the lower left, and for coding regions in the lower right. Blue distributions give the number of genomic regions that colocate at random with SIDD sites, whereas orange distributions show the number of SIDD sites that colocate at random with genomic regions. In each case, the number of genomic regions that actually colocate with SIDD sites is given as the red square, and the number of actual SIDD sites that colocate with the genomic regions is denoted with a pink X.

This Article

  1. Genome Res. 14: 1575-1584

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