Clustering of DNA Sequences in Human Promoters

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Figure 2
Figure 2

Clustering factor of each 8-mer DNA sequence plotted at the position of the most populated bin: All 32,896 8-mers (A); 8687 8-mers with a maximum bin containing ≥20 members (B); clustering factor from –1000 bp to 500 bp for the 6838 8-mers that contain a maximum bin with ≥20 members from one of the 1000 random seventh-order Markov model data sets (C); clustering factor for the 7471 8-mers that contain a maximum bin with ≥20 members from –2500 to –1000 bp (D); and clustering factor values from –1000 to 500 bp for the 8687 8-mers from Figure 2B based on a randomized translocation of the TSS of between 0 and 500 bp (E).

This Article

  1. Genome Res. 14: 1562-1574

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