Table 3.
Pairwise Distance Comparisons of Transcription Factorsa
|
Transcription Factor |
Component of RNAP I, II or III |
Crown Distanceb |
Crown/Giardia Distance |
Crown/Archaea Distancec |
Archaea/Giardia Distance |
||||
|---|---|---|---|---|---|---|---|---|---|
| TBP | I | II | III | 41 | 246 | 123 | 217 | ||
| TFIIH P90 | II | 73 | 158 | ||||||
| TFIIH P80 | II | 74 | 181 | ||||||
| TFIIH Cdk7 | II | 92 | 110 | ||||||
| TFIIA γ | II | 99 | |||||||
| TFIIB | II | 113 | 151 | ||||||
| TFIIH P44 | II | 120 | 256 | ||||||
| TFIIH P52 | II | 126 | |||||||
| TFIIH MAT1 | II | 159 | |||||||
| TFIIH P34 | II | 176 | 289 | ||||||
| BRF | III | 191 | 259 | 204 | 247 | ||||
| TFIIH Cyclin H | II | 199 | |||||||
| TFIIF β | II | 210 | |||||||
| TFIIA αβ | II | 222 | |||||||
| TFIIE β | II | 232 | |||||||
| TFIIE α | II | 244 | 298 | ||||||
| TFIIH P62 | II | 265 | |||||||
| TFIIIC 102 | III | 270 | |||||||
| RRN3 | I | 287 | 481 | ||||||
| TFIIIC 63 | III | 303 | |||||||
| TFIIIA | III | 339 | |||||||
| TFIIF α | II | 349 | |||||||
| TFIIIB B90
|
|
|
III
|
385
|
|
|
|
||
-
↵a Distance is the estimated number of replacements per 100 amino acids. Proteins highlighted in bold have a giardial homolog. Factors are sorted from least to greatest Crown Distance.
-
↵b Inter-kingdom distances only; the animal—animal and fungus—fungus values are excluded
-
↵c Archaea are represented by Methanococcus jannaschii and Sulfolobus solfataricus
