Table 1.
Functional Analysis of Predicted Proteins
|
COG category |
Number of proteins |
% of total |
|---|---|---|
| Energy production and conversion | 29 | 4.6% |
| Cell division and chromosome partitioning | 2 | 0.3% |
| Amino acid transport and metabolism | 19 | 3.0% |
| Nucleotide transport and metabolism | 21 | 3.3% |
| Carbohydrate transport and metabolism | 51 | 8.0% |
| Coenzyme metabolism | 15 | 2.4% |
| Lipid metabolism | 9 | 1.4% |
| Translation, ribosomal structure, and biogenesis | 104 | 16.4% |
| Transcription | 17 | 2.7% |
| DNA replication, recombination, and repair | 58 | 9.1% |
| Cell envelope biogenesis, outer membrane | 45 | 7.1% |
| Cell motility and secretion | 10 | 1.6% |
| Posttranslational modification, protein turnover, chaperones | 19 | 3.0% |
| Inorganic ion transport and metabolism | 14 | 2.2% |
| Secondary metabolites biosynthesis, transport, and catabolism | 6 | 0.9% |
| Signal transduction mechanisms | 14 | 2.2% |
| General function prediction only | 43 | 6.8% |
| Function unknown
|
159
|
25.0%
|
-
For genes that could be placed in clusters of orthologous groups (COGs), the functional category was automatically determined. For genes that did not match to COGs, the gene was assigned to a COG category manually, with the majority of such cases being assigned to the “Function Unknown” category. For genes with more than one COG category, only the first one (in alphabetical order) was used.
