Table 1.

Database Statistics

Input sequence data^a
mRNA	25,634
EST	244,518
WGS	19,813,313
SNPs predicted
Total	33,305
Synonymous	3842 (11.5%)
Nonsynonymous	3708 (11.1%)
Nonsense	162 (0.5%)
At CpG site	8028 (24.1%)
Transition/Transversion ratio	1.76
Database coverage
LocusLink IDs	2547
Unigene IDs	15015
Ensembl genes	7558
Nonsynonymous variations predicted to be damaging
SIFT	1069/2316^b
PolyPhen	1086/2855^b
Both programs	597/2075^b

↵a Number of sequence reads.
↵b Number of predicted damaging SNPs per total number of predictions by the specified program.

Single Nucleotide Polymorphisms Associated With Rat Expressed Sequences