Comparative Sequence and X-Inactivation Analyses of a Domain of Escape in Human Xp11.2 and the Conserved Segment in Mouse

Table 1.

Summary of Genes and ESTs in and Flanking the Human Xp11.2 Escape Domain, and Comparison With Mouse Orthologs


Human gene/EST

X-inactivation status

Expression

Mouse gene/EST

X-inactivation status

Expression

CpG island human/mouse

Nucleotide similarity

Amino acid identity
HADH2 Inactivated Ubiquitous Hadh2 Inactivated Ubiquitous Yes/no 76%-92% 86%
FLJ32783 Escapes Ubiquitous NM_025660 Inactivated Ubiquitous Yes/yes 74%-90% 70%
SMC1L1 Escapes Ubiquitous Smc1l1 Inactivated Ubiquitous Yes/yes 92% 99%
XM_159437-like NDa Brain/testis XM_159437 Inactivated Brain No/no 77% NDb
KIAA0522 Escapes Ubiquitous Kiaa0522 Inactivated Ubiquitous Yes/yes 85%-92% 74%
BE883792 Escapes Ubiquitous BI155935 Inactivated Ubiquitous No/no 87%-94% NDb
SMCX Escapes Ubiquitous Smcx Escapes Ubiquitous Yes/yes 90% 94%
BQ269240 Inactivated Ubiquitousc No/—
AJ271378 Inactivated Ubiquitousc AK013346 Inactivated Ubiquitous No/no 78%-90% NDb
BF364272 Inactivatedd Ubiquitousc BE687445 Inactivated Ubiquitous No/no 84% NDb
TSPX
Inactivated
Ubiquitous
Tspx
Inactivated
Ubiquitous
Yes/yes
81%-85%
70%
  • ND: Not determined.

  • a X-inactivation status could not be determined because of tissue-restricted expression and lack of expression in fibroblasts.

  • b Amino acid identity was not determined for small ESTs.

  • c Expressed in liver and fibroblasts; other tissues not tested.

  • d Variable, low-level escape.

This Article

  1. Genome Res. 14: 1275-1284

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