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Table of Contents
July 2004; 14 (7)
ARTICLES
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A Phylogeny of
Caenorhabditis
Reveals Frequent Loss of Introns During Nematode Evolution
Soochin Cho
,
Suk-Won Jin
,
Adam Cohen
,
and
Ronald E. Ellis
Genome Res.
July 2004
14
:
1207
-
1220
;
doi:
10.1101/gr.2639304
Abstract
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The Insertional History of an Active Family of L1 Retrotransposons in Humans
Stéphane Boissinot
,
Ali Entezam
,
Lynn Young
,
Peter J. Munson
,
and
Anthony V. Furano
Genome Res.
July 2004
14
:
1221
-
1231
;
Published in Advance
June 14, 2004
,
doi:
10.1101/gr.2326704
Abstract
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LETTERS
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Local Definition of Ty1 Target Preference by Long Terminal Repeats and Clustered tRNA Genes
Nurjana Bachman
,
Yolanda Eby
,
and
Jef D. Boeke
Genome Res.
July 2004
14
:
1232
-
1247
;
Published in Advance
June 14, 2004
,
doi:
10.1101/gr.2052904
Abstract
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Extensive Expansion of the Claudin Gene Family in the Teleost Fish,
Fugu rubripes
Yong Hwee Loh
,
Alan Christoffels
,
Sydney Brenner
,
Walter Hunziker
,
and
Byrappa Venkatesh
Genome Res.
July 2004
14
:
1248
-
1257
;
Published in Advance
June 14, 2004
,
doi:
10.1101/gr.2400004
Abstract
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Transcript Level Alterations Reflect Gene Dosage Effects Across Multiple Tissues in a Mouse Model of Down Syndrome
Pascal Kahlem
,
Marc Sultan
,
Ralf Herwig
,
Matthias Steinfath
,
Daniela Balzereit
,
Barbara Eppens
,
Nidhi G. Saran
,
Mathew T. Pletcher
,
Sarah T. South
,
Gail Stetten
,
Hans Lehrach
,
Roger H. Reeves
,
and
Marie-Laure Yaspo
Genome Res.
July 2004
14
:
1258
-
1267
;
doi:
10.1101/gr.1951304
Abstract
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Gene Expression From the Aneuploid Chromosome in a Trisomy Mouse Model of Down Syndrome
Robert Lyle
,
Corinne Gehrig
,
Charlotte Neergaard-Henrichsen
,
Samuel Deutsch
,
and
Stylianos E. Antonarakis
Genome Res.
July 2004
14
:
1268
-
1274
;
doi:
10.1101/gr.2090904
Abstract
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Comparative Sequence and X-Inactivation Analyses of a Domain of Escape in Human Xp11.2 and the Conserved Segment in Mouse
Karen D. Tsuchiya
,
John M. Greally
,
Yajun Yi
,
Kevin P. Noel
,
Jean-Pierre Truong
,
and
Christine M. Disteche
Genome Res.
July 2004
14
:
1275
-
1284
;
Published in Advance
June 14, 2004
,
doi:
10.1101/gr.2575904
Abstract
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Genetic Variation in Coding Regions Between and Within Commonly Used Inbred Rat Strains
Bart M.G. Smits
,
Bert F.M. van Zutphen
,
Ronald H.A. Plasterk
,
and
Edwin Cuppen
Genome Res.
July 2004
14
:
1285
-
1290
;
doi:
10.1101/gr.2155004
Abstract
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Recovery of a Function Involving Gene Duplication by Retroposition in
Saccharomyces cerevisiae
Joseph Schacherer
,
Yves Tourrette
,
Jean-Luc Souciet
,
Serge Potier
,
and
Jacky de Montigny
Genome Res.
July 2004
14
:
1291
-
1297
;
doi:
10.1101/gr.2363004
Abstract
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Reconstruction and Validation of
Saccharomyces cerevisiae
iND750, a Fully Compartmentalized Genome-Scale Metabolic Model
Natalie C. Duarte
,
Markus J. Herrgård
,
and
Bernhard Ø. Palsson
Genome Res.
July 2004
14
:
1298
-
1309
;
Published in Advance
June 14, 2004
,
doi:
10.1101/gr.2250904
Abstract
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Evolution and Topology in the Yeast Protein Interaction Network
Stefan Wuchty
Genome Res.
July 2004
14
:
1310
-
1314
;
doi:
10.1101/gr.2300204
Abstract
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A Protein Interaction Framework for Human mRNA Degradation
Ben Lehner
and
Christopher M. Sanderson
Genome Res.
July 2004
14
:
1315
-
1323
;
doi:
10.1101/gr.2122004
Abstract
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Supplemental Research Data-1
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Functional Proteomics Mapping of a Human Signaling Pathway
Frédéric Colland
,
Xavier Jacq
,
Virginie Trouplin
,
Christelle Mougin
,
Caroline Groizeleau
,
Alexandre Hamburger
,
Alain Meil
,
Jérôme Wojcik
,
Pierre Legrain
,
and
Jean-Michel Gauthier
Genome Res.
July 2004
14
:
1324
-
1332
;
doi:
10.1101/gr.2334104
Abstract
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Identifying Candidate Causal Variants Responsible for Altered Activity of the
ABCB1
Multidrug Resistance Gene
Nicole Soranzo
,
Gianpiero L. Cavalleri
,
Michael E. Weale
,
Nicholas W. Wood
,
Chantal Depondt
,
Richard Marguerie
,
Sanjay M. Sisodiya
,
and
David B. Goldstein
Genome Res.
July 2004
14
:
1333
-
1344
;
Published in Advance
June 14, 2004
,
doi:
10.1101/gr.1965304
Abstract
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Genetic Structure Adds Power to Detect Schizophrenia Susceptibility at
SLIT3
in the Chinese Han Population
YongYong Shi
,
XinZhi Zhao
,
Lan Yu
,
Ran Tao
,
JunXia Tang
,
YuJuan La
,
Yun Duan
,
Bo Gao
,
NiuFan Gu
,
YiFeng Xu
,
GuoYin Feng
,
ShaoMin Zhu
,
HuiJun Liu
,
Hugh Salter
,
and
Lin He
Genome Res.
July 2004
14
:
1345
-
1349
;
doi:
10.1101/gr.1758204
Abstract
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Two Breakpoint Clusters at Fragile Site FRA3B Form Phased Nucleosomes
David J. Mulvihill
and
Yuh-Hwa Wang
Genome Res.
July 2004
14
:
1350
-
1357
;
doi:
10.1101/gr.2304404
Abstract
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Human Haplotype Block Sizes Are Negatively Correlated With Recombination Rates
Tiffany A. Greenwood
,
Brinda K. Rana
,
and
Nicholas J. Schork
Genome Res.
July 2004
14
:
1358
-
1361
;
doi:
10.1101/gr.1540404
Abstract
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Methods
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Regulog Analysis: Detection of Conserved Regulatory Networks Across Bacteria: Application to
Staphylococcus aureus
Wynand B.L. Alkema
,
Boris Lenhard
,
and
Wyeth W. Wasserman
Genome Res.
July 2004
14
:
1362
-
1373
;
doi:
10.1101/gr.2242604
Abstract
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Global Survey of Chromatin Accessibility Using DNA Microarrays
M. Ryan Weil
,
Piotr Widlak
,
John D. Minna
,
and
Harold R. Garner
Genome Res.
July 2004
14
:
1374
-
1381
;
doi:
10.1101/gr.1396104
Abstract
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An Efficient Method to Generate Chromosomal Rearrangements by Targeted DNA Double-Strand Breaks in
Drosophila melanogaster
Dieter Egli
,
Ernst Hafen
,
and
Walter Schaffner
Genome Res.
July 2004
14
:
1382
-
1393
;
Published in Advance
June 14, 2004
,
doi:
10.1101/gr.2279804
Abstract
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Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements
Aaron C.E. Darling
,
Bob Mau
,
Frederick R. Blattner
,
and
Nicole T. Perna
Genome Res.
July 2004
14
:
1394
-
1403
;
doi:
10.1101/gr.2289704
Abstract
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SNP Discovery in Pooled Samples With Mismatch Repair Detection
Hossein Fakhrai-Rad
,
Jianbiao Zheng
,
Thomas D. Willis
,
Kee Wong
,
Kent Suyenaga
,
Martin Moorhead
,
Jim Eberle
,
Yvonne R. Thorstenson
,
Ted Jones
,
Ronald W. Davis
,
Eugeni Namsaraev
,
and
Malek Faham
Genome Res.
July 2004
14
:
1404
-
1412
;
doi:
10.1101/gr.2373904
Abstract
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A Transcript Finishing Initiative for Closing Gaps in the Human Transcriptome
The Ludwig–FAPESP Transcript Finishing Initiative
,
Mari Cleide Sogayar
,
and
Anamaria A. Camargo
Genome Res.
July 2004
14
:
1413
-
1423
;
Published in Advance
June 14, 2004
,
doi:
10.1101/gr.2111304
Abstract
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RESOURCES
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A 1463 Gene Cattle–Human Comparative Map With Anchor Points Defined by Human Genome Sequence Coordinates
Annelie Everts-van der Wind
,
Srinivas R. Kata
,
Mark R. Band
,
Mark Rebeiz
,
Denis M. Larkin
,
Robin E. Everts
,
Cheryl A. Green
,
Lei Liu
,
Shreedhar Natarajan
,
Tom Goldammer
,
Jun Heon Lee
,
Stephanie McKay
,
James E. Womack
,
and
Harris A. Lewin
Genome Res.
July 2004
14
:
1424
-
1437
;
doi:
10.1101/gr.2554404
Abstract
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Single Nucleotide Polymorphisms Associated With Rat Expressed Sequences
Victor Guryev
,
Eugene Berezikov
,
Rainer Malik
,
Ronald H.A. Plasterk
,
and
Edwin Cuppen
Genome Res.
July 2004
14
:
1438
-
1443
;
doi:
10.1101/gr.2154304
Abstract
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ERRATA
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Correction for Volume 14, p. 414
Genome Res.
July 2004
14
:
1444
Extract
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Correction for Volume 14, p. 742
Genome Res.
July 2004
14
:
1444
Extract
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July 2004;
14
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