Microsatellite Markers (N = 45) Whose Sequence Positions (UCSC Assembly Human July 2003/NCBI Build 34) Do Not Correspond to the Marshfield Chromosomal Position (http://research.marshfieldclinic.org/genetics/)
|
Marker name |
UCSC |
Marshfield chromosome |
Other genetic maps |
Yac map chromosome |
RH maps chromosome |
Marshfield screening |
UCSC |
CELERA 03/03 |
||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID |
Chromosome |
11/02 |
06/02 |
04/02 |
||||||||||
| UT5086 | 7782 | 1 | 9 | No | No | No | No | 1 | 1 | 1 | No | |||
| PLA2 | 7128 | 1 | 12 | No | No | Gb4, G3, Wi:1 | No | 1 | 1 | 1 | 1 CelAnno | |||
| GC/SGC31591 | 5929 | 2 | 4 | No | No | Wi:2 | No | 2 | 2 | 2 | 2RefSeq | |||
| UT710 | 6472 | 2 | 7 | No | No | No | No | 2 | 2 | 2 | No | |||
| UT2548 | 6998 | 2 | 11 | No | No | No | No | 2 | 2 | 2 | No | |||
| UT1307 | 7844 | 2 | 20 | No | No | No | 10 | 2 | 2 | 2 | 2 RefSeq | |||
| AFMA101XG5 | 842 | 3 | 2 | Gen:2 | No | No | No | 3 | 3 | 3 | No | |||
| GATA43F06 | 5557 | 3 | 2 | No | Wi:3 | No | No | 3 | 3 | 3 | No | |||
| UT885 | 6629 | 3 | 8 | No | No | No | No | 3 | 3 | 3 | No | |||
| UT5819 | 6876 | 3 | 10 | No | No | No | No | 3 | 3 | 3 | No | |||
| ATA4F06 | 6032 | 4 | 5 | No | No | No | 4-9 | 4 | No | 4 | No | |||
| UT1531 | 6710 | 4 | 9 | No | No | No | No | 4 | 4 | 4 | No | |||
| UT2361 | 6715 | 5 | 9 | No | No | No | No | 5 | 5 | 5 | No | |||
| UT5140 | 7139 | 5 | 12 | No | No | No | No | 5 | 5 | 5 | No | |||
| UT6886 | 7407 | 5 | 15 | No | No | No | No | 5 | 5 | 5 | No | |||
| AFM023TG5 | 4343 | 5 | 17 | Gen:17 | No | No | No | 5 | 5 | 5 | 17 RefSeq | |||
| ATA1H07 | 7502 | 5 | 17 | No | No | No | No | 5 | 5 | 5 | 5 CelAnno | |||
| GATA124A11 | 7816 | 6 | 20 | No | No | No | No | 6 | No | No | 6 CelAnno | |||
| GATA116E08 | 7893 | 8 | 21 | No | No | No | 6 | 8 | 8 | 8 | No | |||
| AFM123yc5 | 328 | 8 | 1 | Gen:1 | No | No | No | 8 | No | 8 | No | |||
| UT924 | 7349 | 10 | 14 | deC:14 | No | No | No | 10 | 10 | 10 | No | |||
| ATA37G10 | 6499 | 11 | 8 | No | No | No | No | 11 | 11 | 11 | No | |||
| UT1607 | 6989 | 12 | 11 | No | No | No | No | 12 | 12 | 12 | No | |||
| UT935 | 7414 | 12 | 15 | No | No | No | No | 12 | 12 | 12 | No | |||
| UT1888 | 7327 | 16 | 14 | No | No | No | No | 16 | 16 | 22 | 1 RefSeq | |||
| UT1598 | 7551 | 16 | 17 | No | No | No | No | 16 | 16 | 16 | No | |||
| UT1025 | 7911 | 16 | 21 | No | No | No | No | 16 | No | No | No | |||
| UT556 | 7920 | 16 | 21 | No | No | No | No | 16 | No | 2, 13 | No | |||
| GAAT1A12 | 6043 | 16 | 5 | No | Wi:5 | No | No | 16 (2×) | 16 | 5 | No | |||
| UT18 | 5621 | 17 | 2 | No | No | No | No | 17 | 17 | 17 | No | |||
| UT5182 | 6611 | 18 | 8 | No | No | No | No | 18 | 18 | 18 | 18 RefSeq | |||
| FB7F11 | 6780 | 18 | 10 | No | No | Gb4, Wi:18 | No | 18 | 18 | 18 | No | |||
| PI | 7319 | 18 | 14 | No | No | No | No | 18 | 18 | 18 | No | |||
| UT7368 | 6476 | 19 | 7 | No | No | No | No | 19 | 19 | 19 | 19 CelAnno | |||
| UT5146 | 5641 | 21 | 2 | No | No | No | No | 11 | 1,2 | 1 | No | |||
| GATA115F05 | 6519 | 21 | 8 | No | No | No | No | 21 | 21 | 21 | 21 RefSeq | |||
| UT5116III | 5638 | 22 | 2 | No | No | No | No | 22 | 22 | 14,22 | No | |||
| UT597 | 7339 | 22 | 14 | No | No | No | No | 22 | 14,22 | 14,22 | No | |||
| UT6047 | 7341 | 22 | 14 | No | No | No | No | 22 | No | 2,14,22 | No | |||
| UT7691 | 5657 | X | 2 | No | No | No | No | X | No | No | 2 CelAnno | |||
| UT764 | 7635 | X | 9 | No | No | No | No | X | X | X | 1 RefSeq | |||
| UT832 | 7020 | X | 11 | No | No | No | No | X | No | No | X CelAnno | |||
| UT6574 | 7156 | X | 12 | No | No | No | No | X | X | X | No | |||
| ATA5E03 | 5293 | Y | 1 | No | No | No | 7 | Y | Y | Y | No | |||
| IFNAR
|
7908
|
Y
|
21
|
No
|
No
|
No
|
No
|
Y
|
Y
|
1,Y
|
No
|
|||
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A comparison to chromosomal locations from additional sources is shown.
Key: 7737 markers are included in the comparison. Available positional information from genetic maps (Genethon, DeCODE), Yac map (Whitehead Institute), and radiation hybridization (RH) maps (NCBI GeneMap99 GB4 and G3, Whitehead Institute, and Stanford TNG RH maps) is provided to help determine which source of information is erroneous. In addition, markers included in the commonly used Marshfield screening sets (1-12) are indicated. Chromosomal positions are also compared with older UCSC assemblies and with the sequence-based Celera database (http://myscience.appliedbiosystems.com/). Markers listed on the Y-chromosome are in the pseudoautosomal region of the Y-chromosome.
