Building Genomic Profiles for Uncovering Segmental Homology in the Twilight Zone

Table 1.

i-ADHoRe Results for the Rice and Arabidopsis-Only Data Sets



O. sativa
Multiplication level
2
3
4


Chromosome 1 21.76% 0% 0%
2 28.14% 1.62% 0%
3 10.67% 0% 0%
4 25.01% 3.70% 0%
5 28.39% 0% 0%
6 16.64% 1.59% 0%
7 8.75% 0% 0%
8 16.13% 0% 0%
9 20.19% 0% 0%
10 9.49% 0% 0%
11 34.81% 9.45% 1.82%
12
27.53%
7.55%
0.86%


Entire genome
20.59%
1.78%
0.18%


A. thaliana
Multiplication level
2
3
4
5
6
Chromosome 1 87.63% 49.44% 36.60% 26.22% 24.67%
2 74.23% 53.40% 43.64% 35.59% 25.87%
3 85.68% 50.15% 39.87% 24.00% 17.41%
4 85.63% 59.40% 49.68% 29.31% 24.19%
5
78.72%
38.32%
27.81%
17.30%
11.21%
Entire genome
82.72%
49.11%
38.29%
25.66%
20.19%
Multiplication level
7
8
9
10

Chromosome 1 9.86% 8.81% 4.77% 3.45%
2 16.95% 14.61% 10.30% 5.17%
3 12.93% 11.27% 6.43% 1.65%
4 15.36% 12.63% 9.41% 8.26%
5
9.36%
6.82%
3.87%
1.93%

Entire genome
12.32%
10.34%
6.47%
3.72%

  • The fraction of the genes that occurs in a multiplicon with a multiplication level X or more is given for each chromosome individually as well as for the entire genome.

This Article

  1. Genome Res. 14: 1095-1106

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