Table 1.
Summary of the Microarray Data Sets Useda
|
Referenceb |
Samplesc |
Genesd |
Raw linkse |
Reference |
Samples |
Genes |
Raw links |
|---|---|---|---|---|---|---|---|
| (Alizadeh et al. 2000) | 96 | 1759 | 25748 | (Nielsen et al. 2002) | 46 | 3359 | 25175 |
| (Allander et al. 2001) | 19 | 1205 | 1251 | (Perou et al. 1999) | 26 | 3027 | 42105 |
| (Armstrong et al. 2002) | 72 | 8242 | 213456 | (Perou et al. 2000) | 84 | 5701 | 167826 |
| (Bhattacharjee et al. 2001) | 203 | 8243 | 243303 | (Pomeroy et al. 2002) | 90 | 5418 | 85909 |
| (Bittner et al. 2000) | 38 | 4382 | 16141 | (Ramaswamy et al. 2001) | 255 | 9528 | 372500 |
| (Butte et al. 2000) | 68 | 4906 | 81755 | (Rickman et al. 2001) | 51 | 5418 | 60169 |
| (Chang et al. 2002) | 50 | 13079 | 328274 | (Rosenwald et al. 2001) | 102 | 3751 | 129814 |
| (Chaussabel et al. 2003) | 28 | 8243 | 80559 | (Ross and Perou 2001) | 24 | 12437 | 3409 |
| (Chen et al. 2002) | 207 | 9169 | 597313 | (Ross et al. 2000) | 68 | 5837 | 45468 |
| (Cheok et al. 2003) | 120 | 8243 | 258731 | (Shipp et al. 2002) | 77 | 5418 | 87486 |
| (Dhanasekaran et al. 2001) | 53 | 5613 | 161097 | (Singh et al. 2002) | 20 | 4119 | 19895 |
| (Diehn et al. 2002) | 68 | 10400 | 1635022 | (Smith et al. 2003) | 102 | 8242 | 248952 |
| (Dyrskjot et al. 2003) | 31 | 5418 | 60343 | (Sorlie et al. 2001) | 85 | 9132 | 1578 |
| (Dyrskjot et al. 2003) | 40 | 5418 | 58461 | (Sorlie et al. 2003) | 122 | 13121 | 14351 |
| (Erraji-BenChekroun et al., in prep.) | 75 | 12057 | 824563 | (Staunton et al. 2001) | 11 | 8257 | 4760 |
| (Garber et al. 2001) | 73 | 9171 | 258866 | (Su et al. 2002) | 12 | 8257 | 128303 |
| (Golub et al. 1999) | 72 | 5418 | 52283 | (Tezak et al. 2002) | 24 | 12057 | 12944 |
| (Greenberg et al. 2002) | 12 | 8243 | 5280 | (Unpublished, GSE443) | 60 | 5418 | 51286 |
| (Gruvberger et al. 2001) | 58 | 2756 | 24781 | (Unpublished, GSE470) | 85 | 8243 | 241088 |
| (Hedenfalk et al. 2001) | 22 | 2253 | 1265 | (Unpublished, GSE474) | 10 | 5418 | 7941 |
| (Hedenfalk et al. 2003) | 16 | 3312 | 673 | (Vahey et al. 2002) | 30 | 5418 | 60268 |
| (Huang et al. 2003) | 89 | 8257 | 137512 | (van't Veer et al. 2002) | 117 | 11312 | 752390 |
| (Huang et al. 2001) | 16 | 8243 | 9634 | (Virtaneva et al. 2001) | 21 | 4804 | 5923 |
| (Jazaeri et al. 2002) | 61 | 3644 | 46187 | (Welle et al. 2001) | 12 | 8243 | 2670 |
| (Khan et al. 2001) | 88 | 1952 | 19868 | (Welsh et al. 2001) | 49 | 5418 | 52459 |
| (Khatua et al. 2003) | 13 | 8257 | 10072 | (Welsh et al. 2001) | 55 | 8258 | 260155 |
| (Leung et al. 2002) | 126 | 12657 | 993195 | (West et al. 2001) | 49 | 5418 | 84842 |
| (Luo et al. 2001) | 25 | 4354 | 14873 | (Whitfield et al. 2002) | 114 | 12801 | 1547199 |
| (Ma et al. 2003) | 61 | 1569 | 10086 | (Yeoh et al. 2002) | 248 | 8257 | 257979 |
| (MacDonald et al. 2001)
|
31
|
1309
|
3179
|
(Yoon et al. 2002)
|
12
|
5418
|
53305
|
-
↵a A version of this table with additional information is available as Supplemental data.
-
↵b In three cases where the data are not published, the Gene Expression Omnibus accession number is given.
-
↵c The number of samples (microarrays) in the data set.
-
↵d The number of unique RefSeq genes represented on the array that were included for analysis.
-
↵e The number of raw coexpression links between the RefSeq gene selected for inclusion in the database.
