Table 1.
The Specificity and Sensitivity for GeneWise Predictions Made With Different Classes of Similarity Data
|
Similarity |
Exon spec. |
Base spec. |
Wrong exon |
Exon sens. (exact) |
Exon sens. (over) |
Base sens. |
|---|---|---|---|---|---|---|
| 85-95, Long | 92.8 | 97.2 | 3.4 | 75.2 | 95.8 | 98.2 |
| 85-85 | 90.1 | 96.4 | 4.8 | 40.2 | 58.4 | 51.3 |
| 75-85 | 81.8 | 88.8 | 9.1 | 41.4 | 62.2 | 55.8 |
| 65-75 | 76.5 | 94.0 | 11.6 | 36.1 | 56.9 | 46.7 |
| 55-65
|
72.9
|
87.6
|
18.1
|
34.5
|
53.2
|
44.7
|
-
The 85-95 Long class are sequences with between 85 to 95% identity and alignments to the target gene to up to 20 amino acids from the termini. The other classes show identity bands with no selection for alignment length. The columns are Exon specificity (exact exons, discounting terminal exons), Base specificity, Wrong exons, Exon sensitivity (exact), Exon sensitivity (overlap), and Base sensitivity.
