Table 1.
Principal Analyses of the'Raw Compute' for the Human Genome With the Size of Input Sequence Used
|
Analysis |
Input sequence size |
|---|---|
| CpG island prediction | chromosome |
| RepeatMasker | contig |
| Dust (low-complexity repeats) | chromosome |
| TRF (tandem repeats) | contig |
| Eponine (transcription start site prediction) | 1-Mb slice |
| Genscan | contig |
| e-PCR (STS markers) | 1-Mb slice |
| tRNAscan | contig |
| BLAST vs. Swall* | contig |
| BLAST vs. Unigene* | contig |
| BLAST vs. EMBL Vertebrate RNA*
|
contig
|
-
↵* BLAST analyses are only run on the peptides predicted by Genscan and not on the full genomic sequence. This is done to speed up the analysis
