The Ensembl Analysis Pipeline

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Figure 1
Figure 1

Ensembl pipeline system overview: The RuleManager uses LSF to submit analysis jobs to the compute farm. When an individual job starts executing on a remote node, the Runner script fetches the job information from the database and recreates the Job object. This in turn creates a RunnableDB and calls the appropriate methods (fetch_input, run, write_output, etc.) to run the analysis.

This Article

  1. Genome Res. 14: 934-941

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