Table 3.
The Results of Block Partitioning for Different Genotyping Error Rates Based on Population P0 With α = 80% and β = 10%
|
|
|
Family design |
Population design |
||||
|---|---|---|---|---|---|---|---|
| Genotyping error rate |
No. of SNPs |
Average no. of tag SNPs using haplotype |
Average no. of tag SNPs using genotype |
Average no. of tag SNPs using haplotype |
Average no. of tag SNPs using genotype |
||
| 0% | 103 | 31 | 30 | 31 | 30 | ||
| 0.5% | 103 | 32 | 31 | 32 | 31 | ||
| 1% | 103 | 33 | 32 | 33 | 33 | ||
| 2% | 103 | 36 | 35 | 36 | 36 | ||
| 5%
|
103
|
43
|
43
|
43
|
43
|
||
-
The SNPs with minor allele frequency >5% are used. The density of SNPs is set as one SNP per kilobase.
